Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3U39_RS10155 Genome accession   NZ_CP120027
Coordinates   2124546..2124845 (-) Length   99 a.a.
NCBI ID   WP_202612955.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog143     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2119546..2129845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U39_RS10140 (P3U39_10145) - 2119635..2121512 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U39_RS10145 (P3U39_10150) - 2121624..2122439 (+) 816 WP_015728742.1 ZIP family metal transporter -
  P3U39_RS10150 (P3U39_10155) comA 2122696..2124546 (-) 1851 WP_322107526.1 peptide cleavage/export ABC transporter Regulator
  P3U39_RS10155 (P3U39_10160) comA 2124546..2124845 (-) 300 WP_202612955.1 cysteine peptidase family C39 domain-containing protein Regulator
  P3U39_RS10160 (P3U39_10165) - 2124970..2125152 (-) 183 WP_037543780.1 hypothetical protein -
  P3U39_RS10165 (P3U39_10170) - 2125224..2125532 (-) 309 WP_049770161.1 DUF3884 family protein -
  P3U39_RS10170 (P3U39_10175) - 2125604..2126734 (-) 1131 WP_063279017.1 glycosyltransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11301.24 Da        Isoelectric Point: 8.8613

>NTDB_id=801891 P3U39_RS10155 WP_202612955.1 2124546..2124845(-) (comA) [Staphylococcus pseudintermedius strain Dog143]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHVKKITIIFTIML

Nucleotide


Download         Length: 300 bp        

>NTDB_id=801891 P3U39_RS10155 WP_202612955.1 2124546..2124845(-) (comA) [Staphylococcus pseudintermedius strain Dog143]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAATAACAATCATTTTCACTATTATGTTGTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

61.111

90.909

0.556
  comA Streptococcus mitis SK321

57.778

90.909

0.525
  comA Streptococcus mitis NCTC 12261

57.778

90.909

0.525
  comA Streptococcus pneumoniae TIGR4

56.667

90.909

0.515
  comA Streptococcus pneumoniae Rx1

56.667

90.909

0.515
  comA Streptococcus pneumoniae D39

56.667

90.909

0.515
  comA Streptococcus pneumoniae R6

56.667

90.909

0.515
  comA/nlmT Streptococcus mutans UA159

52.222

90.909

0.475