Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P3S72_RS29515 Genome accession   NZ_CP119772
Coordinates   6339839..6341356 (+) Length   505 a.a.
NCBI ID   WP_276195427.1    Uniprot ID   -
Organism   Pseudomonas sp. D3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6334839..6346356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S72_RS29485 (P3S72_29480) - 6335368..6336063 (+) 696 WP_276195414.1 HAD-IA family hydrolase -
  P3S72_RS29490 (P3S72_29485) sutA 6336160..6336486 (-) 327 WP_247406754.1 transcriptional regulator SutA -
  P3S72_RS29495 (P3S72_29490) - 6336591..6337016 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P3S72_RS29500 (P3S72_29495) - 6337228..6338565 (-) 1338 WP_276195415.1 ammonium transporter -
  P3S72_RS29505 (P3S72_29500) glnK 6338600..6338938 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  P3S72_RS29510 (P3S72_29505) - 6339361..6339624 (+) 264 WP_276195426.1 accessory factor UbiK family protein -
  P3S72_RS29515 (P3S72_29510) comM 6339839..6341356 (+) 1518 WP_276195427.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P3S72_RS29520 (P3S72_29515) glyA 6341367..6342632 (-) 1266 WP_276195428.1 serine hydroxymethyltransferase -
  P3S72_RS29525 (P3S72_29520) - 6342713..6343053 (-) 341 Protein_5814 alanine racemase -
  P3S72_RS29530 (P3S72_29525) - 6343053..6344294 (-) 1242 WP_276195429.1 benzoate/H(+) symporter BenE family transporter -
  P3S72_RS29535 (P3S72_29530) - 6344437..6345936 (+) 1500 WP_276195430.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53960.25 Da        Isoelectric Point: 8.2105

>NTDB_id=801125 P3S72_RS29515 WP_276195427.1 6339839..6341356(+) (comM) [Pseudomonas sp. D3]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRSVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGQVPIEPFKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSARCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREITALNPAPQP
GDNTSTASALVAQARERQHQRQGCANAFLDLPGLRQHCALSKPDEAWLESACERLTLSLRAAHRLLKVARTLADLERADT
IGRRHIAEALQYRPSASSQVDCANA

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=801125 P3S72_RS29515 WP_276195427.1 6339839..6341356(+) (comM) [Pseudomonas sp. D3]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATCGGCGTCGAAGCCCCCGCCGTCAGCGTCGAAGTGCATATGGCCAA
TGGTCTGCCATCGCTCACGCTGGTGGGTTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAATTCAGCGCTGCAATACCCGGCCCGTCGCATCACCCTCAACCTCGCACCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCCTAGGGATTCTCGCGGCAAGCGTGCAGGTGCCGGCGCTGATGCTCGATGACGTGGAGTGCCT
GGGGGAATTGGCGCTATCGGGCGAGGTACGCGCGGTGAAAGGTGTGTTACCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCAGCGTGATCGTGCCTCGGGCGAATGCCGAAGAGGCCTGCCTGGCGTCCGGGTTGAAGGTGATTGCAGTGGATCACCTG
CTGCAGGTGGTGGCGCACCTGAATGGGCAAGTACCGATCGAGCCCTTCAAGTCTGACGGCTTGCTGTACTTGAACAAGCC
CTACCCGGACCTCAGCGAAGTCCAGGGCCAACTCGCCGCCAAACGCGCGCTGCTGATCGCTGCGGCAGGCGCGCATAACC
TATTGTTCAGCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTACCGCCGCTGAGTGAA
CACGAAGCGCTGGAAGTCGCCGCGATTCAATCCGTGGTCAGCCTGGCGCCATTGAGCCATTGGCCCCACCGGCCGTTTCG
CCAGCCGCACCACTCGGCCTCCGGCCCGGCGCTGGTGGGCGGCGGGTCGAAGCCGCAACCGGGGGAAATCACCCTGGCCC
ACCATGGGGTGCTGTTCCTGGACGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTTTTGCGCGAGCCGCTGGAGTCG
GGGCATATCGTGATCTCCCGCGCACGTGACCGTGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAACCCCTG
CCCTTGCGGTTACATGGGCGACCCCAGCGCGCGCTGTCGCTGTACGCCGGAGCAGATCCAGCGCTACCGCAACAAACTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTGACCGTCGCCCGCGAAATCACCGCGCTGAACCCAGCCCCGCAGCCC
GGCGACAACACGTCCACCGCCTCGGCGCTGGTTGCCCAGGCACGGGAACGCCAGCATCAGCGCCAGGGCTGCGCCAATGC
GTTCCTGGATCTACCGGGGTTGCGCCAGCATTGTGCGCTGTCCAAGCCGGACGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCTTGACCCTGTCGCTTCGAGCAGCCCACCGCCTGCTCAAGGTCGCCCGCACTTTGGCGGATCTGGAGCGCGCCGACACT
ATCGGTCGCCGCCACATTGCCGAAGCCTTGCAATACCGGCCCTCGGCTTCCAGCCAAGTCGACTGCGCCAACGCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

98.02

0.55
  comM Vibrio cholerae strain A1552

56.162

98.02

0.55
  comM Glaesserella parasuis strain SC1401

55.489

99.208

0.55
  comM Haemophilus influenzae Rd KW20

54.4

99.01

0.539
  comM Legionella pneumophila str. Paris

51.008

98.218

0.501
  comM Legionella pneumophila strain ERS1305867

51.008

98.218

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

99.802

0.465