Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P1Y71_RS10780 Genome accession   NZ_CP119600
Coordinates   2663865..2664323 (+) Length   152 a.a.
NCBI ID   WP_005776338.1    Uniprot ID   A0A4Q0U428
Organism   Bacteroides fragilis strain MDR_U01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2658865..2669323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1Y71_RS10765 (P1Y71_10770) - 2660639..2660914 (-) 276 WP_005776335.1 HU family DNA-binding protein -
  P1Y71_RS10770 (P1Y71_10775) mutY 2661119..2662165 (+) 1047 WP_032543805.1 A/G-specific adenine glycosylase -
  P1Y71_RS10775 (P1Y71_10780) - 2662209..2663777 (+) 1569 WP_032543804.1 arylsulfatase -
  P1Y71_RS10780 (P1Y71_10785) ssb 2663865..2664323 (+) 459 WP_005776338.1 single-stranded DNA-binding protein Machinery gene
  P1Y71_RS10785 (P1Y71_10790) - 2664459..2665805 (+) 1347 WP_022013013.1 gliding motility-associated protein GldE -
  P1Y71_RS10790 (P1Y71_10795) - 2665813..2666463 (+) 651 WP_022013014.1 4'-phosphopantetheinyl transferase superfamily protein -
  P1Y71_RS10795 (P1Y71_10800) - 2666484..2668790 (+) 2307 WP_032543819.1 hypothetical protein -
  P1Y71_RS10800 (P1Y71_10805) - 2668873..2669088 (-) 216 WP_005776344.1 (4Fe-4S)-binding protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16725.68 Da        Isoelectric Point: 5.7512

>NTDB_id=800094 P1Y71_RS10780 WP_005776338.1 2663865..2664323(+) (ssb) [Bacteroides fragilis strain MDR_U01]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=800094 P1Y71_RS10780 WP_005776338.1 2663865..2664323(+) (ssb) [Bacteroides fragilis strain MDR_U01]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q0U428

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

41.573

100

0.487
  ssb Neisseria meningitidis MC58

39.205

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.454
  ssb Glaesserella parasuis strain SC1401

37.079

100

0.434
  ssb Latilactobacillus sakei subsp. sakei 23K

32.37

100

0.368