Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   P1Y72_RS08375 Genome accession   NZ_CP119599
Coordinates   1729759..1730469 (+) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1133     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724759..1735469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1Y72_RS08355 (P1Y72_08355) - 1725611..1725760 (+) 150 WP_002990686.1 hypothetical protein -
  P1Y72_RS08360 (P1Y72_08360) - 1726155..1727303 (+) 1149 WP_032460078.1 acetyl-CoA C-acyltransferase -
  P1Y72_RS08365 (P1Y72_08365) - 1727260..1728507 (+) 1248 WP_136274036.1 AMP-binding protein -
  P1Y72_RS08370 (P1Y72_08370) - 1728563..1729597 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  P1Y72_RS08375 (P1Y72_08375) vicR 1729759..1730469 (+) 711 WP_002985645.1 response regulator YycF Regulator
  P1Y72_RS08380 (P1Y72_08380) vicK 1730462..1731814 (+) 1353 WP_111676637.1 cell wall metabolism sensor histidine kinase VicK Regulator
  P1Y72_RS08385 (P1Y72_08385) vicX 1731818..1732627 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  P1Y72_RS08390 (P1Y72_08390) rnc 1733070..1733762 (+) 693 WP_002990670.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=800083 P1Y72_RS08375 WP_002985645.1 1729759..1730469(+) (vicR) [Streptococcus pyogenes strain 1133]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=800083 P1Y72_RS08375 WP_002985645.1 1729759..1730469(+) (vicR) [Streptococcus pyogenes strain 1133]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCCTTTTCTAATCGGGA
ATTGCTGGCACGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACCCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364