Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CupriaWKF_RS01625 Genome accession   NZ_CP119572
Coordinates   344004..345545 (-) Length   513 a.a.
NCBI ID   WP_276099312.1    Uniprot ID   -
Organism   Cupriavidus sp. WKF15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 339004..350545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CupriaWKF_RS01605 (CupriaWKF_01605) - 339179..340246 (+) 1068 WP_276099309.1 porin -
  CupriaWKF_RS01610 (CupriaWKF_01610) nagA 340277..341380 (+) 1104 WP_276099310.1 N-acetylglucosamine-6-phosphate deacetylase -
  CupriaWKF_RS01615 (CupriaWKF_01615) - 341373..342392 (+) 1020 WP_276100628.1 SIS domain-containing protein -
  CupriaWKF_RS01620 (CupriaWKF_01620) zwf 342476..343963 (+) 1488 WP_276099311.1 glucose-6-phosphate dehydrogenase -
  CupriaWKF_RS01625 (CupriaWKF_01625) comM 344004..345545 (-) 1542 WP_276099312.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CupriaWKF_RS01630 (CupriaWKF_01630) - 345649..345927 (-) 279 WP_276099313.1 accessory factor UbiK family protein -
  CupriaWKF_RS01635 (CupriaWKF_01635) - 346307..347110 (+) 804 WP_276099314.1 TorF family putative porin -
  CupriaWKF_RS01640 (CupriaWKF_01640) - 347161..347499 (+) 339 WP_276099315.1 P-II family nitrogen regulator -
  CupriaWKF_RS01645 (CupriaWKF_01645) amt 347526..349076 (+) 1551 WP_276099316.1 ammonium transporter -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54764.82 Da        Isoelectric Point: 8.5116

>NTDB_id=799688 CupriaWKF_RS01625 WP_276099312.1 344004..345545(-) (comM) [Cupriavidus sp. WKF15]
MSLAVLHSRALTGIEAPPVRVETHLANGLPVFTIVGLADTGVRESRERVRAAILNSGFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPSAEFDQYEFAAELSLSGDLRPVRGALAMAMRLARENAARQASGSPPRAFLVAAGNGAEAALIE
DLAVHGAATLREVCSHFAPPHDKRLARAVPAMLARVPEPGPDLRDVRGQAQARRALEVAAAGQHSALLVGPPGTGKSMLA
QRLPGLLPPMSLDEALESAAVLSLTPGGFKPSRWGMRPCRSPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RKVLEVLREPLESGRITIARAAGHADFPACFQFVAAMNPCPCGYLGHPERACRCTPDQIRRYQSKISGPLLDRIDLQIEV
PAQDQGEMLDGPAGEPSEVVRARVLAARQRQLARQGKPNSELSGREIDQHCPLEPTAQALLRGAMARLAWSARSYFRVLK
VARTIADLEGAEVLTSAHVGEAIQYRRALRTPG

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=799688 CupriaWKF_RS01625 WP_276099312.1 344004..345545(-) (comM) [Cupriavidus sp. WKF15]
ATGAGCCTTGCCGTCCTGCACAGCCGCGCGCTCACCGGCATCGAAGCGCCGCCGGTGCGTGTCGAAACCCACCTGGCCAA
TGGCCTGCCGGTCTTCACCATCGTCGGCCTGGCCGACACCGGCGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTTCGAGTTCCCCAACCGCCGGATCACCGTCAATCTCGCGCCGGCGGACCTGCCAAAGGAGTCTGGGCGC
TTCGACCTGGCTATCGCCCTGGGCATCCTTGCCGCAAGCGGGCAGATCCCGTCGGCAGAGTTCGATCAATATGAATTCGC
CGCCGAGCTGTCACTGTCGGGCGACCTGCGGCCGGTACGCGGCGCGCTGGCCATGGCCATGCGCCTGGCACGCGAAAACG
CTGCGCGCCAGGCATCCGGCAGCCCGCCGCGCGCGTTCCTGGTAGCGGCTGGCAATGGCGCCGAGGCGGCACTGATCGAA
GACCTGGCCGTCCATGGCGCCGCCACGCTGCGAGAGGTTTGCAGCCATTTCGCGCCGCCGCACGACAAGCGCCTTGCCCG
CGCCGTGCCGGCCATGCTCGCCCGGGTGCCGGAACCCGGCCCGGACCTGCGCGACGTGCGCGGCCAGGCGCAGGCCCGGC
GGGCCCTGGAGGTGGCTGCCGCCGGCCAGCACTCGGCCCTGCTCGTCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCC
CAGCGCCTGCCCGGGCTGCTGCCGCCCATGTCCCTCGATGAGGCGCTGGAGTCGGCCGCGGTGCTGAGCCTGACGCCGGG
GGGCTTCAAGCCGTCGCGATGGGGCATGCGGCCGTGCCGCTCGCCCCATCACACGGCGTCGGGGCCGGCCATGGTCGGCG
GCGGCGGCAACCCGCGCCCCGGCGAGATCTCGCTCGCGCACCACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTTGAT
CGCAAAGTGCTGGAAGTGCTGCGCGAGCCGCTGGAATCCGGCCGCATCACCATCGCCCGCGCCGCGGGCCATGCCGACTT
CCCGGCCTGCTTCCAGTTCGTGGCCGCCATGAACCCGTGCCCCTGCGGCTACCTCGGCCATCCGGAGCGCGCTTGCCGCT
GCACGCCTGACCAGATCCGGCGCTACCAGTCGAAGATCTCGGGGCCGCTGCTTGACCGGATCGACCTGCAGATCGAAGTC
CCCGCGCAGGACCAGGGCGAGATGCTGGACGGCCCCGCCGGCGAGCCCAGCGAAGTGGTGCGCGCGCGGGTGCTGGCCGC
GCGCCAGCGTCAGCTTGCGCGGCAAGGCAAACCCAACAGCGAACTCTCCGGCCGCGAGATCGACCAGCACTGCCCGCTGG
AGCCGACCGCCCAGGCCTTGCTGCGCGGGGCCATGGCCCGGCTGGCGTGGTCGGCCCGCTCCTATTTCCGGGTGCTCAAG
GTGGCCCGCACGATCGCCGACCTCGAGGGCGCCGAAGTCCTGACCAGCGCGCATGTCGGCGAGGCAATCCAGTACCGGCG
CGCGTTGCGGACGCCAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.465

98.83

0.519
  comM Vibrio campbellii strain DS40M4

51.677

98.83

0.511
  comM Haemophilus influenzae Rd KW20

49.027

100

0.491
  comM Glaesserella parasuis strain SC1401

48.527

99.22

0.481
  comM Legionella pneumophila str. Paris

47.665

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.665

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.141

99.805

0.441