Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RDV59_RS02995 Genome accession   NZ_CP133476
Coordinates   575148..575810 (+) Length   220 a.a.
NCBI ID   WP_038675340.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570148..580810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS02970 (RDV59_02970) - 570450..571160 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  RDV59_RS02975 (RDV59_02975) - 571295..571954 (+) 660 WP_038675333.1 CBS and ACT domain-containing protein -
  RDV59_RS02980 (RDV59_02980) cysK 572139..573065 (-) 927 WP_002883742.1 cysteine synthase A -
  RDV59_RS02985 (RDV59_02985) - 573167..573793 (-) 627 WP_038675335.1 YigZ family protein -
  RDV59_RS02990 (RDV59_02990) comFA/cflA 573848..575167 (+) 1320 WP_038675337.1 DEAD/DEAH box helicase Machinery gene
  RDV59_RS02995 (RDV59_02995) comFC/cflB 575148..575810 (+) 663 WP_038675340.1 ComF family protein Machinery gene
  RDV59_RS03000 (RDV59_03000) hpf 575889..576437 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26131.44 Da        Isoelectric Point: 8.8866

>NTDB_id=799673 RDV59_RS02995 WP_038675340.1 575148..575810(+) (comFC/cflB) [Streptococcus salivarius strain LMG 11489]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKPFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=799673 RDV59_RS02995 WP_038675340.1 575148..575810(+) (comFC/cflB) [Streptococcus salivarius strain LMG 11489]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGACATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTAGATGATATCTATACAACAGGATCTACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45