Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P2C01_RS01630 Genome accession   NZ_CP119521
Coordinates   343695..344228 (+) Length   177 a.a.
NCBI ID   WP_014205867.1    Uniprot ID   A0A0Q2XSJ5
Organism   Vibrio furnissii strain C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338695..349228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS01615 uvrA 338803..341625 (-) 2823 WP_275723556.1 excinuclease ABC subunit UvrA -
  P2C01_RS01620 galU 341763..342632 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P2C01_RS01625 qstR 342762..343412 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  P2C01_RS01630 ssb 343695..344228 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  P2C01_RS01635 csrD 344364..346358 (+) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  P2C01_RS01640 - 346366..347811 (+) 1446 WP_275723559.1 MSHA biogenesis protein MshI -
  P2C01_RS01645 gspM 347811..348461 (+) 651 WP_158108005.1 type II secretion system protein GspM -
  P2C01_RS01650 - 348454..348765 (+) 312 WP_004724074.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19671.81 Da        Isoelectric Point: 5.7626

>NTDB_id=799438 P2C01_RS01630 WP_014205867.1 343695..344228(+) (ssb) [Vibrio furnissii strain C1]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=799438 P2C01_RS01630 WP_014205867.1 343695..344228(+) (ssb) [Vibrio furnissii strain C1]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTAGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGCATGCCAGCACAGGGTGGCGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAACCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XSJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

90.503

100

0.915
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.559
  ssb Neisseria meningitidis MC58

48.023

100

0.48
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.48