Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   P2C01_RS01625 Genome accession   NZ_CP119521
Coordinates   342762..343412 (-) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 337762..348412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS01615 uvrA 338803..341625 (-) 2823 WP_275723556.1 excinuclease ABC subunit UvrA -
  P2C01_RS01620 galU 341763..342632 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P2C01_RS01625 qstR 342762..343412 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  P2C01_RS01630 ssb 343695..344228 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  P2C01_RS01635 csrD 344364..346358 (+) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  P2C01_RS01640 - 346366..347811 (+) 1446 WP_275723559.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=799437 P2C01_RS01625 WP_014205868.1 342762..343412(-) (qstR) [Vibrio furnissii strain C1]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=799437 P2C01_RS01625 WP_014205868.1 342762..343412(-) (qstR) [Vibrio furnissii strain C1]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACTCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514