Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P0M04_RS04780 Genome accession   NZ_CP119520
Coordinates   1070587..1072113 (+) Length   508 a.a.
NCBI ID   WP_259448516.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065587..1077113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS04755 (P0M04_04765) - 1066941..1068503 (-) 1563 WP_259448519.1 ammonium transporter -
  P0M04_RS04760 (P0M04_04770) - 1068514..1068852 (-) 339 WP_025511601.1 P-II family nitrogen regulator -
  P0M04_RS04765 (P0M04_04775) - 1068865..1069611 (-) 747 WP_259448518.1 TorF family putative porin -
  P0M04_RS04770 (P0M04_04780) - 1069878..1070126 (+) 249 WP_025511838.1 accessory factor UbiK family protein -
  P0M04_RS04775 (P0M04_04785) - 1070130..1070447 (-) 318 WP_259448517.1 hypothetical protein -
  P0M04_RS04780 (P0M04_04790) comM 1070587..1072113 (+) 1527 WP_259448516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P0M04_RS04785 (P0M04_04795) - 1072099..1073304 (-) 1206 WP_259448515.1 MFS transporter -
  P0M04_RS04790 (P0M04_04800) - 1073422..1074381 (-) 960 WP_259448514.1 GlxA family transcriptional regulator -
  P0M04_RS04795 (P0M04_04805) - 1074644..1075405 (+) 762 WP_259448513.1 SDR family oxidoreductase -
  P0M04_RS04800 (P0M04_04810) - 1075433..1075951 (+) 519 WP_259448512.1 hypothetical protein -
  P0M04_RS04805 (P0M04_04815) - 1075953..1076693 (+) 741 WP_259448511.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54762.57 Da        Isoelectric Point: 7.4234

>NTDB_id=799418 P0M04_RS04780 WP_259448516.1 1070587..1072113(+) (comM) [Telluria mixta strain ACM 1762]
MSLAVLRSRALAGMEAPAVSVEVHLANGLPAMNIVGLADAEVRESKDRVRAALQNSGFEVPSRRITINLAPAELPKESGR
FDLPIALGILAASDQIPSSALDGYEFAGELSLSGELRPVRGALAMSFAMLRQHAHEDAFARAFVLPWANADEAALVTDAV
IYPARSLLEVCAHFAAKSDETRLARYRPAPSDAPPVYPDFADVKGQQQVKRALEVAAAGLHSVLLVGPPGAGKSMLASRF
PGLLPPLREEDALETAAIQSLAGSFAIERWRKRPFRNPHHTSSGVALVGGGQGPRPGEISLAHHGVLFLDELPEFDRKVL
EVLREPLETGAITISRAARQADFPASFQLIAAMNPCPCGWLGHPSGKCRCTPDAVQRYQDRISGPLLDRIDIQVPVAAMT
PDTMAQLADGEPSAAIAARVAQAHARQLSRQGKANQKLTTREIDRHCHLDTAAERLLGDAMQHLHWSARAYHRVLKVART
IADLAGLDTVNAQHVAEAIQYRRGLRDH

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=799418 P0M04_RS04780 WP_259448516.1 1070587..1072113(+) (comM) [Telluria mixta strain ACM 1762]
ATGAGCCTCGCCGTCCTCAGAAGCCGCGCCCTGGCCGGCATGGAAGCCCCTGCCGTCAGCGTCGAAGTCCACCTGGCCAA
TGGATTACCGGCCATGAATATCGTGGGGTTGGCGGACGCCGAGGTGCGCGAATCGAAAGACCGCGTGCGCGCCGCGCTGC
AGAACTCGGGCTTCGAGGTGCCGAGCCGGCGCATCACGATCAACCTCGCGCCGGCCGAACTGCCCAAGGAATCCGGCAGG
TTCGATCTGCCGATCGCGCTGGGCATCCTCGCGGCGTCGGACCAGATCCCGTCCAGCGCGCTGGACGGCTACGAATTCGC
CGGCGAGCTGTCGCTGTCGGGCGAACTGCGCCCCGTGCGCGGTGCGCTGGCGATGAGTTTCGCGATGCTGCGTCAACACG
CCCACGAGGATGCGTTCGCGCGCGCCTTCGTGCTGCCGTGGGCGAACGCGGACGAGGCGGCCCTCGTGACGGACGCCGTC
ATCTACCCTGCCCGCTCGCTGCTGGAGGTGTGCGCGCACTTCGCCGCGAAGTCCGACGAGACGCGGCTTGCGCGCTACCG
CCCCGCGCCGTCCGACGCGCCGCCCGTGTACCCGGACTTCGCGGACGTCAAAGGCCAGCAACAGGTCAAGCGCGCGCTCG
AGGTGGCGGCAGCGGGCCTGCATTCCGTGCTGCTGGTCGGGCCGCCGGGCGCCGGCAAGAGCATGCTCGCCTCGCGCTTC
CCCGGCCTGCTGCCGCCGCTGCGCGAGGAGGACGCACTGGAGACGGCCGCGATCCAGTCGCTCGCGGGCAGCTTCGCCAT
CGAGCGCTGGCGAAAACGGCCGTTCCGCAATCCGCACCACACGAGTTCCGGCGTGGCCCTCGTCGGCGGCGGACAGGGTC
CGCGCCCCGGAGAGATTTCGCTGGCCCACCATGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGACCGCAAGGTGCTG
GAAGTGCTGCGCGAACCGCTGGAAACGGGCGCCATCACGATCTCGCGCGCCGCGCGCCAGGCCGACTTCCCCGCCAGTTT
TCAATTGATCGCCGCGATGAATCCCTGCCCGTGCGGCTGGCTCGGTCACCCATCGGGCAAGTGCCGCTGCACACCGGACG
CCGTGCAGCGCTACCAGGACCGCATCTCCGGCCCCCTCCTCGACCGCATCGACATCCAGGTGCCGGTGGCGGCCATGACG
CCGGACACGATGGCGCAACTGGCCGACGGCGAACCGAGCGCCGCCATCGCCGCGCGCGTCGCACAGGCGCACGCGCGCCA
GTTATCTCGCCAGGGCAAGGCCAACCAGAAGCTGACGACGCGCGAGATCGACCGCCACTGCCACCTCGACACCGCCGCCG
AACGCCTGCTGGGCGACGCCATGCAGCACCTGCACTGGTCGGCACGCGCCTATCACCGGGTACTGAAGGTGGCGCGCACG
ATCGCCGATCTGGCCGGTCTCGATACGGTCAACGCCCAGCACGTGGCGGAGGCGATCCAGTATCGGCGAGGGTTACGCGA
CCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-401)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.079

99.409

0.518
  comM Vibrio cholerae strain A1552

51.881

99.409

0.516
  comM Legionella pneumophila str. Paris

50.491

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.491

100

0.506
  comM Glaesserella parasuis strain SC1401

49.606

100

0.496
  comM Haemophilus influenzae Rd KW20

48.047

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.224

100

0.457