Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   P1T45_RS02320 Genome accession   NZ_CP119427
Coordinates   412372..413871 (+) Length   499 a.a.
NCBI ID   WP_003108552.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 407372..418871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS02305 (P1T45_02305) pbp3 407411..408631 (-) 1221 WP_003108558.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  P1T45_RS02310 (P1T45_02310) pbp3 408755..409993 (-) 1239 WP_003108557.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  P1T45_RS02315 (P1T45_02315) amiA3 410325..412304 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  P1T45_RS02320 (P1T45_02320) amiC 412372..413871 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  P1T45_RS02325 (P1T45_02325) amiD 413871..414797 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  P1T45_RS02330 (P1T45_02330) amiE 414806..415876 (+) 1071 WP_308695593.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS02335 (P1T45_02335) - 415869..416483 (+) 615 Protein_413 ATP-binding cassette domain-containing protein -
  P1T45_RS02340 (P1T45_02340) - 416687..417016 (+) 330 Protein_414 peptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55819.28 Da        Isoelectric Point: 10.0775

>NTDB_id=799237 P1T45_RS02320 WP_003108552.1 412372..413871(+) (amiC) [Streptococcus parauberis strain KSP45]
MKKYIFERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKDNYRNTIFERMGYVNYYNSKELQSKAE
KMDKAVTIEPTAKNKAVYKKFIKQQGKGWTLKEFEESKEFYAVRDIPIYERVWNFFSHILVIDHPWTIQDPKNPNLERYI
RPEMDPAVGPALVGSGTKHKYLLFFDGNFPFIHQNFVSFDLGTSYPTYANIPVIQVITQGQGRSLSEQTKFPSGVTKFSP
IDITSRTYKSPKDADARDRANFGPKDPYTATKNKHAEPSMIANSFKIGIIGVALSYIIGLPIGMLMAYYKDGIFDRFSTA
ATTFMLALPSIALIYIVRFLGSKIGLPDTFPLLGASDPRSYVLPALILGILGTPGTVVWFRRYIVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDAIKAANNSMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=799237 P1T45_RS02320 WP_003108552.1 412372..413871(+) (amiC) [Streptococcus parauberis strain KSP45]
ATGAAAAAGTATATATTCGAGCGCATTTTGAGGTCTTTGATTTCAATTTTGTTGGTAACGACATTAACTTATGTCATTGT
TTTTACATTGGTACCAACAAACTTGATTTTTAAACAGGACCCCAACTATAATAAGATGGTGACTACACCAGATAAGAAAG
ATAACTACCGTAATACCATTTTTGAACGCATGGGTTATGTTAATTACTATAATAGTAAAGAACTTCAAAGCAAAGCTGAA
AAAATGGATAAGGCCGTAACGATTGAACCAACTGCTAAAAATAAAGCGGTCTACAAAAAATTCATCAAGCAACAAGGTAA
AGGTTGGACGCTGAAAGAATTCGAAGAAAGCAAAGAATTTTATGCGGTTAGAGATATTCCAATCTATGAACGTGTTTGGA
ACTTCTTTAGTCATATCCTTGTTATTGATCATCCTTGGACGATACAAGATCCAAAGAATCCTAATTTGGAACGCTATATT
AGACCCGAAATGGATCCAGCAGTCGGACCTGCCTTAGTTGGTTCTGGAACTAAGCATAAATACTTGCTCTTCTTTGATGG
GAATTTCCCATTCATTCACCAAAACTTTGTTTCCTTTGACTTAGGAACTTCTTATCCAACCTATGCTAATATTCCTGTAA
TTCAGGTTATCACACAAGGACAAGGTAGAAGTCTATCAGAACAAACTAAATTCCCGTCTGGAGTTACTAAGTTTTCACCA
ATTGATATCACAAGTAGAACTTATAAATCACCTAAAGATGCAGATGCTCGTGACCGAGCTAATTTCGGCCCGAAAGATCC
TTATACAGCAACTAAGAATAAACATGCTGAGCCATCAATGATTGCAAATTCATTTAAAATTGGAATCATTGGTGTTGCCT
TGTCATATATTATTGGGCTACCTATTGGTATGCTTATGGCCTATTATAAAGATGGAATTTTTGATCGATTTTCTACAGCA
GCTACAACATTTATGTTGGCTTTGCCAAGTATTGCCTTGATTTATATTGTTCGCTTCTTGGGTTCGAAAATTGGTTTACC
AGATACTTTTCCATTGTTAGGAGCCAGTGATCCAAGATCTTATGTATTGCCTGCATTAATTTTAGGTATTTTAGGAACGC
CTGGAACCGTTGTATGGTTCCGTCGTTATATCGTTGACTTACAAGGAAGCGATTTTGTTCGATTTGCGCGTGCAAAAGGA
TTAACAGAAGCTGAAATTTCAAAAAATCACCTATTTAAGCAAGCGATGGTACCAATTGTTAATGGTATTCCCCAAGCAAT
TGTTGCAACTATCGCAGGTGCGACACTGACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTAATTGATGCTA
TTAAAGCAGCAAATAACTCAATGGTCGTTGGACTAGTCTTTATCTTTGCAGTCTTATCAATTCTTGCTTTATTAGCAGGG
GACATTTTAATGACTATCTTAGATCCACGTATTAAATTATCAAGTAAAGGAGGGAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

61.323

100

0.613
  amiC Streptococcus thermophilus LMG 18311

61.122

100

0.611
  amiC Streptococcus salivarius strain HSISS4

60.922

100

0.609