Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   P1T45_RS02330 Genome accession   NZ_CP119427
Coordinates   414806..415876 (+) Length   356 a.a.
NCBI ID   WP_308695593.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 409806..420876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS02315 (P1T45_02315) amiA3 410325..412304 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  P1T45_RS02320 (P1T45_02320) amiC 412372..413871 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  P1T45_RS02325 (P1T45_02325) amiD 413871..414797 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  P1T45_RS02330 (P1T45_02330) amiE 414806..415876 (+) 1071 WP_308695593.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS02335 (P1T45_02335) - 415869..416483 (+) 615 Protein_413 ATP-binding cassette domain-containing protein -
  P1T45_RS02340 (P1T45_02340) - 416687..417016 (+) 330 Protein_414 peptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39861.81 Da        Isoelectric Point: 5.6754

>NTDB_id=799239 P1T45_RS02330 WP_308695593.1 414806..415876(+) (amiE) [Streptococcus parauberis strain KSP45]
MTENKEVILSAKNVVVEFDVRDRVLTAIRDISIDLHEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGKQITEVIVKHQKKPRSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAITLACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYEFTIIFITHDLGVVASIATNVAVMYAGEVVE
YGTVEDVFYDPRHPYTWSLLSSLPQLADDKGILFSIPGTPPSLYKPIIGDAFAPRSQYAMKIDFEEAVPKFDISDSHWAK
TWLLHPEAPKVQKPVVIQNLHEKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=799239 P1T45_RS02330 WP_308695593.1 414806..415876(+) (amiE) [Streptococcus parauberis strain KSP45]
ATGACTGAAAATAAAGAAGTAATTTTAAGTGCAAAGAATGTTGTTGTAGAATTTGACGTACGTGACCGTGTTTTGACTGC
CATCCGTGATATCTCTATCGATTTACATGAAGGAGAAGTCCTTGCGGTTGTTGGCGAGTCAGGTAGTGGTAAGTCAGTAC
TAACAAAAACATTTACCGGAATGTTAGAATCTAATGGTCGCGTTGCCTCAGGGTCGATTGATTACCGCGGACAAGAACTA
ACAAAACTAAAAAATCATAAAGATTGGGAAGGAATACGTGGTGCAAAAATTGCGACCATCTTCCAAGACCCGATGACCAG
TTTAGACCCAATTCAAACCATTGGGAAACAAATTACGGAAGTAATAGTTAAACATCAGAAAAAACCTAGATCAGAAGCTA
AAAAACTTGCGATTGATTATATGAATAAAGTTGGTATTCCAGAAGCTGAAAAACGTTTTGATGAATATCCTTTCCAATAC
TCTGGTGGGATGAGACAACGTATCGTTATTGCCATTACTCTTGCATGTCGTCCAGATATCCTTATCTGTGATGAGCCAAC
AACAGCTTTAGACGTTACTATCCAAGCTCAAATTATTGACTTATTAAAAACACTTCAAAAAGAATACGAATTTACAATTA
TCTTCATCACTCATGATTTGGGCGTTGTTGCAAGTATTGCAACCAACGTTGCAGTAATGTATGCTGGCGAAGTTGTTGAG
TATGGAACGGTTGAGGATGTTTTCTATGATCCTCGTCATCCATATACATGGAGTTTATTATCAAGTCTACCTCAATTAGC
AGATGACAAGGGGATTCTCTTTTCAATTCCCGGAACGCCTCCATCTTTATACAAACCAATTATTGGCGACGCCTTTGCTC
CAAGATCTCAGTATGCTATGAAGATTGATTTTGAAGAAGCTGTTCCAAAATTTGATATTAGCGACAGCCATTGGGCTAAA
ACATGGTTACTCCATCCGGAGGCACCAAAAGTTCAAAAACCAGTAGTTATACAAAATTTACATGAGAAAATCTCAAGTAA
GCAAATTTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.611

100

0.795
  amiE Streptococcus thermophilus LMD-9

78.611

100

0.795
  oppD Streptococcus mutans UA159

56.232

96.91

0.545