Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P1T45_RS02325 Genome accession   NZ_CP119427
Coordinates   413871..414797 (+) Length   308 a.a.
NCBI ID   WP_003104826.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 408871..419797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS02315 (P1T45_02315) amiA3 410325..412304 (+) 1980 WP_003108554.1 peptide ABC transporter substrate-binding protein Regulator
  P1T45_RS02320 (P1T45_02320) amiC 412372..413871 (+) 1500 WP_003108552.1 ABC transporter permease Regulator
  P1T45_RS02325 (P1T45_02325) amiD 413871..414797 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  P1T45_RS02330 (P1T45_02330) amiE 414806..415876 (+) 1071 WP_308695593.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS02335 (P1T45_02335) - 415869..416483 (+) 615 Protein_413 ATP-binding cassette domain-containing protein -
  P1T45_RS02340 (P1T45_02340) - 416687..417016 (+) 330 Protein_414 peptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34431.17 Da        Isoelectric Point: 6.9724

>NTDB_id=799238 P1T45_RS02325 WP_003104826.1 413871..414797(+) (amiD) [Streptococcus parauberis strain KSP45]
MASIDKSKFEFVELDSYASEVIDAPSYSYWKSVFRQFFSRKSTIVMLVILIAIILMSFVYPMFANYDFGDVSNINDFSKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATAINMIVGVVVGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTYKIVSKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSYLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=799238 P1T45_RS02325 WP_003104826.1 413871..414797(+) (amiD) [Streptococcus parauberis strain KSP45]
ATGGCATCTATAGATAAAAGCAAGTTCGAATTTGTCGAACTAGATAGTTATGCATCAGAAGTCATTGATGCCCCTTCCTA
TTCATACTGGAAATCAGTATTTAGACAATTCTTTTCACGTAAATCTACTATTGTAATGTTAGTTATTTTAATTGCAATCA
TCCTAATGAGTTTTGTATATCCGATGTTTGCTAACTATGACTTTGGTGATGTGTCAAACATTAATGATTTCTCTAAACGC
TATATCTCTCCAAATGGGGAATATTGGTTTGGTACAGACAAAAATGGTCAGTCACTCTTTGATGGTGTTTGGTATGGTGC
TAGAAACTCGATCCTAATTTCCGTTATTGCTACAGCAATCAATATGATTGTTGGGGTAGTTGTTGGTGGCCTTTGGGGAG
TTTCAAAAGCAGTTGATAAGGTAATGATTGAAGTCTACAATGTTATTTCTAACTTACCTCAAATGCTTATCATTATTGTC
TTAACTTATTCAATTGGTGCTGGTTTCTGGAACCTTATCTTTGCCTTCTGTGTAACTGGATGGATAGGGATTGCTTATGC
TGTCCGTGTCCAAGTACTCCGTTACCGTGATTTAGAGTATAACTTAGCCAGTCAAACACTAGGAACACCAACTTACAAAA
TTGTATCCAAAAATTTATTACCACAGTTAGTTTCTGTTATTGTATCAATGGTTTCTCTTTTGTTACCAGCCTACATTTCA
TCAGAAGCCTTCTTATCATTTTTTGGTTTAGGATTACCATTGTCAGAACCAAGTTTAGGCCGTTTGATTTCAAATTATTC
ATCATATTTGACAACAAACGCTTACCTATTCTGGATTCCATTAACTACTCTTATTCTAGTATCTCTTCCACTTTATATAG
TTGGACAAAACTTAGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731