Detailed information NTG0799203

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PTW35_RS17545
• Genome accession: NZ_CP119423
• Coordinates: 3841102..3842631 (-)
• Length: 509 a.a.
• NCBI ID: WP_281026017.1
• Uniprot ID: -
• Organism: Photobacterium sp. DA100
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3832690..3850390	3841102..3842631	within	0

Gene organization within MGE regions

Location: 3832690..3850390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTW35_RS17505 (PTW35_17505)	-	3832690..3834135 (+)	1446	WP_281026009.1	TrkH family potassium uptake protein	-
PTW35_RS17510 (PTW35_17510)	-	3834227..3834886 (-)	660	WP_281026010.1	hemolysin III family protein	-
PTW35_RS17515 (PTW35_17515)	-	3835023..3835811 (-)	789	WP_281026011.1	sporulation protein	-
PTW35_RS17520 (PTW35_17520)	-	3835973..3836650 (-)	678	WP_281026012.1	FadR/GntR family transcriptional regulator	-
PTW35_RS17525 (PTW35_17525)	-	3837302..3837568 (+)	267	WP_281026013.1	YihD family protein	-
PTW35_RS17530 (PTW35_17530)	ccoG	3837837..3839261 (+)	1425	WP_281026014.1	cytochrome c oxidase accessory protein CcoG	-
PTW35_RS17535 (PTW35_17535)	-	3839368..3840357 (+)	990	WP_281026015.1	serine/threonine protein kinase	-
PTW35_RS17540 (PTW35_17540)	-	3840430..3841032 (+)	603	WP_281026016.1	thiol:disulfide interchange protein DsbA/DsbL	-
PTW35_RS17545 (PTW35_17545)	comM	3841102..3842631 (-)	1530	WP_281026017.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PTW35_RS17550 (PTW35_17550)	ilvG	3843038..3844684 (+)	1647	WP_281026018.1	acetolactate synthase 2 catalytic subunit	-
PTW35_RS17555 (PTW35_17555)	ilvM	3844684..3844932 (+)	249	WP_039468244.1	acetolactate synthase 2 small subunit	-
PTW35_RS17560 (PTW35_17560)	ilvE	3844953..3845888 (+)	936	WP_044622194.1	branched-chain-amino-acid transaminase	-
PTW35_RS17565 (PTW35_17565)	ilvD	3845955..3847796 (+)	1842	WP_281026019.1	dihydroxy-acid dehydratase	-
PTW35_RS17570 (PTW35_17570)	ilvA	3847803..3849356 (+)	1554	WP_281027553.1	threonine ammonia-lyase, biosynthetic	-
PTW35_RS17575 (PTW35_17575)	-	3849384..3849779 (-)	396	WP_281026020.1	helix-turn-helix transcriptional regulator	-
PTW35_RS17580 (PTW35_17580)	-	3850010..3850390 (-)	381	WP_039468230.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 509 a.a.
• Molecular weight: 54832.97 Da
• Isoelectric Point: 7.3498

>NTDB_id=799203 PTW35_RS17545 WP_281026017.1 3841102..3842631(-) (comM) [Photobacterium sp. DA100]
MNLAIIHSRASVGVQAPAVTVEVHISNGMPAFQLVGLPETSVKEAKDRVRSAIVNAGFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPADKLQYFEFLGELALSGELRPVKGALPAALAAGQAKRCLVVPDGNGDQVALVGKERHKSAQSL
LAVCTYLHGEGELLLVQSEAADLGESPAPVRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPPM
SIEEAMETAAVASLTQQHIHEGNWRQRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGILFLDEMPEFERKVLDSLREP
LESGEIVISRATSKTTFPARFQLIGALNPSPTGFYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSIEIPALPRGTLADGG
DRGEPSAVIRERVLGARNAMVHRSGRVNALLGTRELDTFCKLGRQDAEFLETALHQLGLSIRAYHRIIKVARTIADLAGC
EAIERRHLAEALGYRAMDRLLRQLTAQAI

Nucleotide

• Length: 1530 bp

>NTDB_id=799203 PTW35_RS17545 WP_281026017.1 3841102..3842631(-) (comM) [Photobacterium sp. DA100]
ATGAACCTTGCCATTATCCATAGCCGTGCCAGTGTCGGGGTTCAGGCCCCAGCGGTCACTGTCGAGGTGCATATCAGTAA
TGGGATGCCCGCTTTTCAACTGGTCGGGTTGCCAGAGACCAGTGTCAAGGAAGCCAAGGACCGGGTGCGCAGTGCCATCG
TCAATGCGGGGTTTGAGTTTCCGTCTCGGCGTATAACCGTCAACCTGGCGCCGGCCGATCTGCCCAAGGAAGGCGGTCGG
TTTGACTTGCCAATTGCGCTTGGGATTCTGGCAGCTTCGGAACAAATCCCTGCCGATAAGCTGCAATATTTTGAATTTTT
GGGGGAGTTGGCGCTTTCCGGTGAATTGCGTCCGGTCAAGGGGGCGCTGCCTGCGGCCTTGGCGGCCGGACAGGCCAAAC
GTTGCCTGGTGGTACCCGATGGCAATGGCGATCAGGTGGCGCTGGTGGGCAAAGAGCGGCATAAATCAGCTCAGAGCCTG
TTGGCGGTCTGCACCTATTTACATGGCGAGGGCGAACTGCTGCTGGTGCAGTCTGAAGCTGCGGACCTGGGGGAGTCCCC
CGCGCCGGTTCGTGACATGCAAGATATCATTGGCCAGCAGCAAGGCAAGCGGGCTTTGGAAATTGCCGCTGCCGGCGGCC
ATAACCTGCTATTTCTCGGCCCACCCGGTACCGGCAAGACCATGCTGGCGTCACGGCTGTGTGATTTGCTGCCGCCGATG
TCCATTGAGGAGGCGATGGAAACTGCCGCCGTTGCCTCGCTGACCCAGCAGCATATCCACGAGGGCAATTGGCGCCAGCG
CCCTTTCCGCACCCCCCACCATTCCAGCTCGATGGCGGCGTTAGTCGGCGGGGGCTCGGTCCCCCGCCCCGGTGAAATCT
CCCTGGCCCACAACGGTATCCTGTTCCTGGACGAAATGCCGGAATTCGAGCGCAAGGTGTTGGACTCGCTGCGCGAGCCT
CTGGAGTCTGGCGAGATCGTGATCTCCCGTGCGACCAGCAAGACCACTTTCCCTGCCCGGTTCCAGCTTATCGGTGCCCT
GAACCCCAGCCCGACCGGCTTTTACGAGGGCAACCAGTCGCGTACCAATCCGCAAGCCATACTGCGCTACCTTAGCCGCT
TGTCGGGTCCGCTCCTTGATCGCTTTGATATGTCGATTGAGATCCCGGCCCTGCCGCGCGGGACACTGGCGGATGGTGGC
GATCGGGGCGAGCCCAGTGCGGTTATTCGTGAGCGGGTGTTGGGCGCGCGCAACGCCATGGTCCATCGCAGCGGACGGGT
CAATGCCCTGCTGGGAACGCGGGAGCTGGACACGTTCTGCAAGCTCGGCAGGCAAGATGCGGAATTTCTCGAAACCGCCT
TGCATCAGCTCGGCCTGTCGATCCGGGCTTATCACCGGATCATCAAAGTGGCGAGGACGATTGCCGACCTGGCCGGCTGT
GAAGCTATCGAGCGGCGACATCTTGCCGAGGCGCTAGGATACCGGGCAATGGATAGGCTACTGCGCCAGCTGACGGCGCA
GGCAATATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (192-393)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-495)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	79.371	100	0.794
comM	Vibrio cholerae strain A1552	77.8	100	0.778
comM	Glaesserella parasuis strain SC1401	63.725	100	0.639
comM	Haemophilus influenzae Rd KW20	63.065	100	0.631
comM	Legionella pneumophila str. Paris	49.398	97.839	0.483
comM	Legionella pneumophila strain ERS1305867	49.398	97.839	0.483
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	42.885	99.411	0.426