Detailed information NTG0798788

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PY254_RS06310
• Genome accession: NZ_CP119392
• Coordinates: 1483645..1484814 (+)
• Length: 389 a.a.
• NCBI ID: WP_281014626.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. AS-Z3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1478645..1489814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY254_RS06295 (PY254_06295)	-	1480681..1481256 (-)	576	WP_281014623.1	YggT family protein	-
PY254_RS06300 (PY254_06300)	proC	1481253..1482077 (-)	825	WP_281014624.1	pyrroline-5-carboxylate reductase	-
PY254_RS06305 (PY254_06305)	pilT	1482439..1483476 (+)	1038	WP_281014625.1	type IV pilus twitching motility protein PilT	Machinery gene
PY254_RS06310 (PY254_06310)	pilU	1483645..1484814 (+)	1170	WP_281014626.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PY254_RS06315 (PY254_06315)	-	1484898..1485350 (-)	453	WP_345781829.1	BON domain-containing protein	-
PY254_RS06320 (PY254_06320)	-	1485521..1487302 (-)	1782	WP_281014627.1	hypothetical protein	-
PY254_RS06325 (PY254_06325)	-	1487392..1488318 (-)	927	WP_281014628.1	aspartate carbamoyltransferase catalytic subunit	-
PY254_RS06330 (PY254_06330)	ruvX	1488346..1488795 (-)	450	WP_281014629.1	Holliday junction resolvase RuvX	-
PY254_RS06335 (PY254_06335)	-	1488792..1489361 (-)	570	WP_281014630.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 43365.85 Da
• Isoelectric Point: 6.8175

>NTDB_id=798788 PY254_RS06310 WP_281014626.1 1483645..1484814(+) (pilU) [Rhodanobacter sp. AS-Z3]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQSRDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPSIEELTLPPVIKQLAMTKRGIIIFVGGTGTGKSTSLASMIGYRNLNSTGHIIT
IEDPIEYVHKHEGCIITQRELGIDTDSWDNALKNTLRQAPDVIMIGEVRTRETMEHAINFSETGHLCLCTLHANNANQAM
DRILHFFAEDRRQQLLMDLSLNLKGIVAQMLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETANSNTMGGANFLNR

Nucleotide

• Length: 1170 bp

>NTDB_id=798788 PY254_RS06310 WP_281014626.1 1483645..1484814(+) (pilU) [Rhodanobacter sp. AS-Z3]
ATGAGCGACTTTGATTTCACCTCCTTTCTGAAACTGATGGTGCACAAGAAAGCATCCGACCTGTTCATCACGGCGGGTGT
GGCGCCATCGATGAAGGTGCAGGGGCGGATCGTGCCGATCACCCAGAGCCCGCTCAGCGTGCAGCAGTCGCGCGACATGG
TGCTCAACGTGATGACGCCCGGTCAGCGCGAGGAGTTCGAGAAAACCCATGAATGCCAGTTCGCGATTTCCGCGCAGGGT
GTGGGTCGCTTCCGTGTCTCGTGCTTCTACCAGCGTAATTGCGTCGGCATGGTGTTACGCCGGATCGAGTCGAAGATCCC
GTCCATCGAGGAATTGACGCTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCATCTTCGTGGGCG
GTACCGGCACCGGCAAATCCACCTCGCTGGCCTCGATGATCGGTTATCGCAACCTGAATTCGACCGGTCACATCATCACC
ATCGAAGACCCGATCGAGTACGTGCACAAGCACGAAGGCTGCATCATTACCCAGCGCGAACTGGGTATCGATACCGATAG
CTGGGACAACGCGCTGAAGAACACGCTGCGTCAGGCACCCGACGTGATCATGATTGGCGAAGTGCGCACGCGTGAAACCA
TGGAACACGCGATCAACTTCTCCGAAACGGGCCACTTGTGCCTGTGCACGCTGCATGCGAACAACGCCAACCAGGCGATG
GACCGCATCCTGCATTTCTTCGCGGAAGACCGTCGCCAGCAGTTGTTGATGGACCTGTCACTGAACCTCAAGGGCATCGT
GGCGCAGATGCTGATTCCCACGCCAGACGGCAAGGCGCGCCGCGTGGCGGTGGAAGTGCTGCTAGGTACGCCGCTGGTGC
AGGATTACATCCGCCAGGGTGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCGACCCTGTTGGGCATGAAGACCTTC
GACCAGAGTCTGGTCGAGCTCTATCACGCTGGCGAAATCAGCTACGAGGATGCGCTGCGTCACGCCGACAGCTCCAACGA
AGTGCGCTTGCGCATCAAGCTGGCGCAGGGTGGTGATGCGCATACCTTGTCGCAAGGTCTGGATGGTGTCGAGCTGGAAG
AAACCGCCAATTCGAATACCATGGGCGGCGCGAACTTCCTCAACCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.216	95.116	0.63
pilU	Acinetobacter baylyi ADP1	62.36	91.517	0.571
pilU	Vibrio cholerae strain A1552	51.404	91.517	0.47
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.243	99.486	0.38