Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PY254_RS03980 Genome accession   NZ_CP119392
Coordinates   951991..953484 (+) Length   497 a.a.
NCBI ID   WP_281014179.1    Uniprot ID   -
Organism   Rhodanobacter sp. AS-Z3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 946991..958484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY254_RS03965 (PY254_03965) - 948132..950528 (-) 2397 WP_281015149.1 ribonucleoside-diphosphate reductase subunit alpha -
  PY254_RS03970 (PY254_03970) glnK 951048..951386 (-) 339 WP_281014178.1 P-II family nitrogen regulator -
  PY254_RS03975 (PY254_03975) - 951568..951828 (+) 261 WP_281015150.1 accessory factor UbiK family protein -
  PY254_RS03980 (PY254_03980) comM 951991..953484 (+) 1494 WP_281014179.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PY254_RS03985 (PY254_03985) - 953563..955350 (+) 1788 WP_281014180.1 sodium:proton antiporter -
  PY254_RS03990 (PY254_03990) - 955485..956321 (+) 837 WP_281014181.1 SAM-dependent methyltransferase -
  PY254_RS03995 (PY254_03995) - 956492..956791 (+) 300 WP_281014182.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53509.29 Da        Isoelectric Point: 7.8628

>NTDB_id=798784 PY254_RS03980 WP_281014179.1 951991..953484(+) (comM) [Rhodanobacter sp. AS-Z3]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPSTNIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLAIALGILAASGQVPRDKLDDCEFLGELALSGALRSVSGVLPALLRARARGRRVVVPRENSAEAALVADVDVRVADSL
AEVCGWLRGAQELSMPVGIPSTGGAEDGPDLADVRGQLQARRALEITAVGGHHLLLIGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQATDFARWRRRPFRSPHHTASAVALVGGGSYPRPGEVSLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIMISRAARQSTFPAQFQLVAAMNPCPCGYAGSPRCQCTPDQIQRYRSRISGPLLDRIDLCVEVPPVPLADLGAPRGE
RDEDSATVRTRVLKARRQSLMRAGRPNAEISTRELERDCALGAPERRWFEGALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=798784 PY254_RS03980 WP_281014179.1 951991..953484(+) (comM) [Rhodanobacter sp. AS-Z3]
ATGAGCCTTGCCGTCACCCTGAGCCGCGCGCAGGAAGGAATCGCCGCGCCGCAAGTCATGGTCGAGGTGCATCTTTCCGG
CGGCCTGCCCTCTACCAATATCGTGGGCCTGCCGGAGGCGGCGGTGCGCGAGGCACGTGATCGGGTTCGCGTGGCGATCC
AGAACACGGCCTTCGAATATCCCGGGCGGCGCGTCACGGTGAACCTGGCGCCGGCAGAGTTGCCCAAGGACGGCGGTCGT
TTCGACCTGGCCATTGCGCTGGGCATTCTCGCCGCCAGCGGTCAGGTGCCGCGCGACAAACTGGACGATTGCGAGTTTCT
TGGCGAACTGGCGCTGAGTGGCGCGCTGCGCAGCGTATCTGGTGTATTGCCGGCCTTGCTGCGTGCCCGGGCGCGCGGTC
GTCGCGTGGTGGTGCCGCGTGAAAATTCTGCCGAAGCGGCCTTGGTGGCCGATGTCGACGTGCGCGTGGCCGACAGCCTT
GCCGAAGTGTGTGGTTGGCTGCGTGGTGCGCAAGAGCTGTCGATGCCGGTTGGCATCCCCAGCACTGGTGGCGCCGAGGA
CGGCCCTGATCTCGCCGACGTGCGCGGGCAACTGCAGGCGCGCCGCGCGCTGGAAATTACTGCAGTTGGTGGTCATCACT
TGTTGCTGATCGGGCCGCCAGGTACGGGCAAGACCATGCTGGCCGAACGTCTGCCGGGTATCCTGCCGCCGCTGAGCGAG
TCAGAGGCGCTGGAAACCTGCGCGGTGCTGTCCGTGGCCGGACAAGCTACGGACTTCGCACGCTGGCGCCGACGCCCGTT
TCGCTCGCCCCATCACACCGCTTCGGCAGTGGCACTGGTCGGTGGTGGCTCGTATCCACGGCCGGGTGAAGTATCGCTGG
CACACAACGGCGTGCTGTTTCTGGACGAGTTGCCGGAGTTCAGCCGGCACGTGCTCGAGGTGCTGCGTGAGCCGATGGAG
TCCGGTCACATCATGATTTCGCGGGCGGCACGGCAATCGACGTTTCCCGCCCAGTTTCAGCTTGTCGCGGCGATGAATCC
GTGTCCCTGTGGTTATGCCGGCAGCCCGCGTTGCCAGTGCACGCCGGATCAGATCCAGCGCTATCGCTCGCGCATTTCCG
GTCCGCTGCTGGATCGCATCGATCTGTGCGTGGAAGTGCCGCCGGTGCCGCTGGCGGATCTGGGCGCGCCACGTGGCGAA
CGCGATGAGGACTCGGCTACGGTGCGCACGCGCGTGCTGAAGGCGCGTCGCCAATCGCTGATGCGGGCGGGCCGGCCGAA
CGCGGAAATCAGTACCCGCGAGCTCGAACGCGATTGTGCGCTGGGCGCGCCCGAACGCCGCTGGTTCGAAGGTGCGTTGG
AGCGGCTCGGTCTGTCTGCGCGTGCCTACCATCGCGTACTGCGGGTGGCGCGCACGATCGCCGATCTGGACGGTGGCGCG
GCCTTGCTGGAGCGCGAGCACCTGGCCGAAGCATTGCAATACCGGCGCTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Glaesserella parasuis strain SC1401

53.106

100

0.533
  comM Haemophilus influenzae Rd KW20

52.705

100

0.529
  comM Legionella pneumophila str. Paris

51.102

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.102

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.91

100

0.453