Detailed information NTG0798550

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PY250_RS12400
• Genome accession: NZ_CP119334
• Coordinates: 2667787..2668656 (+)
• Length: 289 a.a.
• NCBI ID: WP_136976640.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2662787..2673656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY250_RS12380 (PY250_12380)	nadC	2663188..2664075 (+)	888	WP_005386616.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PY250_RS12385 (PY250_12385)	pilA	2664337..2664786 (+)	450	WP_054574816.1	pilin	Machinery gene
PY250_RS12390 (PY250_12390)	pilB	2664790..2666475 (+)	1686	WP_136976641.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PY250_RS12395 (PY250_12395)	pilC	2666499..2667722 (+)	1224	WP_005385411.1	type II secretion system F family protein	Machinery gene
PY250_RS12400 (PY250_12400)	pilD	2667787..2668656 (+)	870	WP_136976640.1	prepilin peptidase	Machinery gene
PY250_RS12405 (PY250_12405)	coaE	2668657..2669271 (+)	615	WP_213904896.1	dephospho-CoA kinase	-
PY250_RS12410 (PY250_12410)	zapD	2669299..2670039 (+)	741	WP_136976639.1	cell division protein ZapD	-
PY250_RS12415 (PY250_12415)	yacG	2670198..2670392 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
PY250_RS12420 (PY250_12420)	rplS	2671047..2671400 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PY250_RS12425 (PY250_12425)	trmD	2671442..2672203 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PY250_RS12430 (PY250_12430)	rimM	2672231..2672779 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
PY250_RS12435 (PY250_12435)	rpsP	2672809..2673057 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32495.65 Da
• Isoelectric Point: 7.0195

>NTDB_id=798550 PY250_RS12400 WP_136976640.1 2667787..2668656(+) (pilD) [Vibrio alginolyticus strain 2-1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
AFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=798550 PY250_RS12400 WP_136976640.1 2667787..2668656(+) (pilD) [Vibrio alginolyticus strain 2-1]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCAGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GCATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.174	95.502	0.498
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46