Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   PY247_RS04480 Genome accession   NZ_CP119223
Coordinates   971859..972992 (+) Length   377 a.a.
NCBI ID   WP_275573690.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 966859..977992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS04460 (PY247_04460) - 967399..969512 (-) 2114 Protein_863 TonB-dependent copper receptor -
  PY247_RS04465 (PY247_04465) - 969586..970023 (-) 438 WP_004656476.1 DUF2946 family protein -
  PY247_RS04470 (PY247_04470) def 970044..970574 (-) 531 WP_275573689.1 peptide deformylase -
  PY247_RS04475 (PY247_04475) tsaP 970697..971848 (+) 1152 WP_070076722.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PY247_RS04480 (PY247_04480) dprA 971859..972992 (+) 1134 WP_275573690.1 DNA-processing protein DprA Machinery gene
  PY247_RS04485 (PY247_04485) - 973029..973598 (+) 570 WP_275573691.1 Sua5/YciO/YrdC/YwlC family protein -
  PY247_RS04490 (PY247_04490) - 974018..974935 (-) 918 WP_004656483.1 ABC transporter permease -
  PY247_RS04495 (PY247_04495) - 974945..976050 (-) 1106 Protein_870 ABC transporter permease -
  PY247_RS04500 (PY247_04500) - 976079..977641 (-) 1563 WP_275574140.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41940.82 Da        Isoelectric Point: 6.8371

>NTDB_id=798211 PY247_RS04480 WP_275573690.1 971859..972992(+) (dprA) [Acinetobacter proteolyticus strain AP54]
MLNQLSPHHYHTVLVWYLVQHSLSSFSKIQQHFGGCEQAIQPHRFPEWSQLGLHANHLKRLAEFQSPQGQQQFQQLLDLV
CKYSDFILTPEDLGYPTQLLPYADRPPILFGQGQAQALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAHG
IDQAAHQGGLAHQRTIAVTGTGLDSVYPAQHKQLAQQITQSGAIVTEFLPTTMPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVIEDLALPTQWQAQQHPTDEASTAPPPSLPA
HLIALYQSLDWIGQDLDQLALRHPITIAELTAQLMELELLGLCLQQAGRYLRCRPMH

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=798211 PY247_RS04480 WP_275573690.1 971859..972992(+) (dprA) [Acinetobacter proteolyticus strain AP54]
ATGTTGAATCAATTATCACCTCATCACTATCACACTGTGTTGGTGTGGTACTTGGTTCAGCATTCGTTGTCGAGTTTCAG
CAAAATTCAGCAGCACTTTGGTGGCTGTGAACAAGCAATACAACCACATCGTTTCCCAGAATGGTCACAATTGGGCTTAC
ACGCCAATCACTTAAAACGTTTAGCCGAATTTCAAAGCCCTCAGGGTCAACAACAATTCCAACAATTGCTTGATCTAGTC
TGTAAATATAGTGATTTTATTTTAACGCCAGAAGATCTGGGTTATCCCACTCAGCTCTTGCCATATGCAGATCGTCCACC
CATTTTATTTGGACAAGGTCAGGCACAGGCCTTATTACAACCACAGATTGCTATGGTCGGCAGCCGTAAACCGAGTCCAC
ATGGACGCCAAGTCGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGCTTTTATATCAGCAGTGGTTTGGCACATGGG
ATTGATCAAGCCGCACATCAAGGTGGATTGGCACATCAACGAACCATTGCAGTGACAGGTACAGGTCTAGATAGCGTCTA
CCCTGCTCAGCACAAACAACTGGCACAGCAAATTACCCAATCTGGGGCCATCGTGACTGAGTTTCTACCAACCACGATGC
CCCTACAACAACACTTCCCCAGACGCAATCGAATTGTCAGTGGTCTGAGTCTGGGTGTATTGGTGGTTGAGGCAGCACTG
AAAAGTGGTTCTCTCATCACCGCGAATGAAGCAGCCAATCAAGGTAAAATGGTCTTTGCAATTCCAGGGCATATTTATAG
TGAACACCATCAAGGCTGTCATCAACTGATTCGCGAAGGTGCGATTCTGGTCGATCATCCCGAACAGGTCATCGAAGATT
TAGCGCTACCGACGCAATGGCAAGCCCAACAACACCCAACGGATGAAGCCAGTACTGCTCCTCCACCAAGCCTGCCCGCA
CATTTGATTGCGTTGTATCAGAGTCTGGACTGGATTGGACAAGATTTGGATCAACTGGCGCTGCGCCATCCAATCACGAT
TGCAGAGCTAACCGCCCAATTAATGGAATTGGAATTACTGGGTTTATGTCTACAACAAGCAGGACGCTATTTACGTTGTC
GCCCAATGCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

75.2

99.469

0.748

  dprA Acinetobacter baumannii strain A118

74.933

99.469

0.745

  dprA Acinetobacter baylyi ADP1

69.211

100

0.698

  dprA Vibrio cholerae strain A1552

42.771

88.064

0.377