Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PY247_RS04475 Genome accession   NZ_CP119223
Coordinates   970697..971848 (+) Length   383 a.a.
NCBI ID   WP_070076722.1    Uniprot ID   A0A1E7QXY0
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 965697..976848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS04455 (PY247_04455) - 966144..967330 (-) 1187 Protein_862 hypothetical protein -
  PY247_RS04460 (PY247_04460) - 967399..969512 (-) 2114 Protein_863 TonB-dependent copper receptor -
  PY247_RS04465 (PY247_04465) - 969586..970023 (-) 438 WP_004656476.1 DUF2946 family protein -
  PY247_RS04470 (PY247_04470) def 970044..970574 (-) 531 WP_275573689.1 peptide deformylase -
  PY247_RS04475 (PY247_04475) tsaP 970697..971848 (+) 1152 WP_070076722.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PY247_RS04480 (PY247_04480) dprA 971859..972992 (+) 1134 WP_275573690.1 DNA-processing protein DprA Machinery gene
  PY247_RS04485 (PY247_04485) - 973029..973598 (+) 570 WP_275573691.1 Sua5/YciO/YrdC/YwlC family protein -
  PY247_RS04490 (PY247_04490) - 974018..974935 (-) 918 WP_004656483.1 ABC transporter permease -
  PY247_RS04495 (PY247_04495) - 974945..976050 (-) 1106 Protein_870 ABC transporter permease -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41851.97 Da        Isoelectric Point: 9.4198

>NTDB_id=798210 PY247_RS04475 WP_070076722.1 970697..971848(+) (tsaP) [Acinetobacter proteolyticus strain AP54]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSVNFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGKGLENGQRYGVFREGEPYIVLDQNGKKQNLGVELTQVASAVAIRN
ENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGVEIGQV
FSVYQDGEVVRDPKTKEKVKLPGQYLGSAMIFKSFDRISYAYILESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=798210 PY247_RS04475 WP_070076722.1 970697..971848(+) (tsaP) [Acinetobacter proteolyticus strain AP54]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGCAGCAATTTGTGC
AGGTTTGGGGATGAGCGTGAATTTCGCCCATGCAGCAAGCCCAAATGTCAGTCCTCCTTCAGTGAAAGTCGGTGCGCCAC
ATGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCTGGGAAGTTTTTAAGTAAGCCTTGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACATGTGAAAAATCCGCACTGGATTTATCCTGGAGATCGCTTACTACTTTGTAGTTTGAACGG
TAAACCTTTAATCGGTAAAGATGAAGGTGATGGTTGTGACGGTATCATTCGCCGCTATACAGGCAATACTTCTAATTTAC
GTCCTCAAGTACGTGTTGAGGCCTTGAATAATAGCGTTCCTGTGATTCCCTTGGCTCATATTCAGCAATGGCTAGAACGC
ACTTCAGTTCTACCCGCAGATGCGATTGCCAATACCCCTTATATCTTGGGTACAGCAGACAACCGCGTACTTGCAGGTAA
AGGCCAAAGTGTTTACGTACGTGGTAAAGGCCTTGAAAACGGTCAACGTTATGGCGTATTCCGTGAAGGTGAACCGTACA
TCGTATTGGACCAAAATGGCAAGAAACAGAATCTTGGGGTTGAGCTGACGCAAGTGGCTTCGGCTGTTGCCATTCGCAAT
GAAAATGACATCACTACAGTTGAACTCACCGATAGTTACAACGGTGAAGTTCGTCGTGGCGATCGGGTTATGGCTGAACA
GGATGCCATGCTACCAACCTTATTCTACCCAATTGATGCCAATCAGGTAAAAGACGGCGGTAAAATCATTCGTGTGATGG
GTTCAATTGGCACAGCAGCCAAAAATGGCGTGGTCACCGTTGATCGTGGCACCGCTGACGGCGTTGAAATTGGTCAAGTG
TTCAGTGTCTATCAAGATGGTGAAGTGGTCCGAGATCCGAAGACCAAAGAGAAAGTGAAACTCCCTGGACAATATCTAGG
TAGCGCCATGATCTTTAAGAGCTTTGATCGTATCAGCTATGCCTATATCCTTGAAAGCGAGCTACCGATCAAGCTTGGTT
CGGATATTAAGCCACCTCGTTTAGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7QXY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.833

100

0.71