Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   RBI11_RS18115 Genome accession   NZ_CP133052
Coordinates   3830482..3832470 (-) Length   662 a.a.
NCBI ID   WP_057094469.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3825482..3837470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS18085 (RBI11_18120) trmA 3826047..3827132 (+) 1086 WP_000204680.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  RBI11_RS18090 (RBI11_18125) - 3827381..3827611 (+) 231 WP_000011679.1 hypothetical protein -
  RBI11_RS18095 (RBI11_18130) - 3827647..3828393 (-) 747 WP_000699303.1 phosphodiester glycosidase family protein -
  RBI11_RS18100 (RBI11_18135) - 3828579..3829169 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  RBI11_RS18105 (RBI11_18140) - 3829215..3829805 (-) 591 WP_000550331.1 YceI family protein -
  RBI11_RS18110 (RBI11_18145) - 3830020..3830427 (+) 408 WP_000248284.1 OsmC family protein -
  RBI11_RS18115 (RBI11_18150) recP/tkt 3830482..3832470 (-) 1989 WP_057094469.1 transketolase Machinery gene
  RBI11_RS18120 (RBI11_18155) metK 3832995..3834161 (+) 1167 WP_057093569.1 methionine adenosyltransferase -
  RBI11_RS18125 (RBI11_18160) - 3834286..3834534 (-) 249 WP_000966850.1 hypothetical protein -
  RBI11_RS18130 (RBI11_18165) - 3834793..3834978 (+) 186 WP_000192620.1 hypothetical protein -
  RBI11_RS18135 (RBI11_18170) - 3835042..3835602 (-) 561 WP_001050727.1 FxsA family protein -
  RBI11_RS18140 (RBI11_18175) - 3836001..3836825 (+) 825 WP_057094079.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-121 -
  RBI11_RS18145 (RBI11_18180) - 3836897..3837442 (-) 546 WP_001109738.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72257.69 Da        Isoelectric Point: 5.0198

>NTDB_id=798069 RBI11_RS18115 WP_057094469.1 3830482..3832470(-) (recP/tkt) [Acinetobacter baumannii strain A1014]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQQ
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=798069 RBI11_RS18115 WP_057094469.1 3830482..3832470(-) (recP/tkt) [Acinetobacter baumannii strain A1014]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTACGCTCCAGGGATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AGACTTTAGCTGCTCAGTTTAATAAAGATGACTTAAAAGTAGTTGATCACTTTACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCGCT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCAGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAAACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAACAA
AACCCGGCTGGTAACTACGTGTATTATGGTGTACGCGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
TGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCAGTACGTATGTCTGCATTAATGA
AGCAACGCGTGATTCATGTGTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473