Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   PY824_RS10190 Genome accession   NZ_CP119172
Coordinates   1947077..1947391 (-) Length   104 a.a.
NCBI ID   WP_039671228.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942077..1952391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS10155 (PY824_10155) - 1942805..1944079 (-) 1275 WP_099412170.1 DNA recombination protein RmuC -
  PY824_RS10160 (PY824_10160) - 1944081..1944710 (-) 630 WP_039671226.1 thiamine diphosphokinase -
  PY824_RS10165 (PY824_10165) rpe 1944707..1945366 (-) 660 WP_039671227.1 ribulose-phosphate 3-epimerase -
  PY824_RS10170 (PY824_10170) rsgA 1945373..1946245 (-) 873 WP_014295296.1 ribosome small subunit-dependent GTPase A -
  PY824_RS10185 (PY824_10185) - 1946687..1946944 (-) 258 WP_051673292.1 hypothetical protein -
  PY824_RS10190 (PY824_10190) comD/comD3 1947077..1947391 (-) 315 WP_039671228.1 GHKL domain-containing protein Regulator
  PY824_RS10195 (PY824_10195) - 1947523..1947693 (-) 171 WP_039671229.1 hypothetical protein -
  PY824_RS10200 (PY824_10200) - 1947965..1948276 (-) 312 WP_039671231.1 bacteriocin immunity protein -
  PY824_RS10205 (PY824_10205) - 1948288..1948437 (-) 150 WP_039671232.1 hypothetical protein -
  PY824_RS11680 - 1948447..1948644 (-) 198 WP_308292628.1 DUF3884 family protein -
  PY824_RS10215 (PY824_10215) - 1948568..1948747 (-) 180 WP_223246323.1 hypothetical protein -
  PY824_RS10220 (PY824_10220) - 1948967..1949104 (+) 138 WP_009854999.1 hypothetical protein -
  PY824_RS10225 (PY824_10225) - 1949126..1950433 (-) 1308 WP_099412171.1 sensor histidine kinase -
  PY824_RS10230 (PY824_10230) comE/comE1 1950441..1951172 (-) 732 WP_009855001.1 response regulator transcription factor Regulator
  PY824_RS10235 (PY824_10235) - 1951189..1951473 (-) 285 WP_231101259.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11842.35 Da        Isoelectric Point: 4.7868

>NTDB_id=798069 PY824_RS10190 WP_039671228.1 1947077..1947391(-) (comD/comD3) [Streptococcus macedonicus strain SGM CIP105683]
MDCFEIPRITYIHSLAILFDNRIEATVLSDVPKISVANFYQDDNFVFMIENSTKEDSIPIDNVNQKGYSSKGNNRGIGLA
TVIEFHQEYGKLPIEISSSNHLFR

Nucleotide


Download         Length: 315 bp        

>NTDB_id=798069 PY824_RS10190 WP_039671228.1 1947077..1947391(-) (comD/comD3) [Streptococcus macedonicus strain SGM CIP105683]
ATGGATTGTTTCGAAATTCCACGTATTACCTACATTCATAGCCTTGCTATTCTGTTTGATAATAGGATTGAAGCTACAGT
ATTATCAGATGTTCCTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCA
AAGAAGATAGTATTCCGATTGATAACGTTAATCAAAAAGGCTATTCAAGCAAAGGTAATAATCGTGGTATTGGCTTAGCA
ACAGTTATTGAATTTCATCAAGAATATGGCAAGCTACCCATTGAAATAAGCAGCTCAAATCACCTCTTTAGATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(13-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

56.566

95.192

0.538
  comD/comD2 Streptococcus equinus JB1

55.102

94.231

0.519
  comD/comD1 Streptococcus equinus JB1

46.939

94.231

0.442
  comD/blpH Streptococcus mutans UA159

42

96.154

0.404