Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PZO51_RS21640 Genome accession   NZ_CP119170
Coordinates   4608498..4610018 (+) Length   506 a.a.
NCBI ID   WP_303569438.1    Uniprot ID   -
Organism   Enterobacter mori strain LgD10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4603498..4615018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZO51_RS21620 (PZO51_21620) ilvE 4605063..4605992 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  PZO51_RS21625 (PZO51_21625) ilvM 4606011..4606274 (-) 264 WP_120159891.1 acetolactate synthase 2 small subunit -
  PZO51_RS21630 (PZO51_21630) ilvG 4606271..4607917 (-) 1647 WP_303569437.1 acetolactate synthase 2 catalytic subunit -
  PZO51_RS21635 (PZO51_21635) ilvL 4608057..4608155 (-) 99 WP_001311244.1 ilv operon leader peptide -
  PZO51_RS21640 (PZO51_21640) comM 4608498..4610018 (+) 1521 WP_303569438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PZO51_RS21645 (PZO51_21645) - 4610048..4610386 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  PZO51_RS21650 (PZO51_21650) hdfR 4610505..4611326 (+) 822 WP_182402035.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55085.97 Da        Isoelectric Point: 6.8206

>NTDB_id=798013 PZO51_RS21640 WP_303569438.1 4608498..4610018(+) (comM) [Enterobacter mori strain LgD10]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDEVTDVPDDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGMLRQTGIQS
ESSANVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAEWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=798013 PZO51_RS21640 WP_303569438.1 4608498..4610018(+) (comM) [Enterobacter mori strain LgD10]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCGGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACAACCAGGCTAGGTTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGCGCAATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAATGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGTCCGAACCGGAGGAGTGTGACGATGAGGTAACGGATGTACC
AGATGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCAGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAAACCATGCTGGCGAGCAGGTTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCCGCGATATATAGCCTGATCGGTTCTACGTCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCCATTGAATCC
GGCGAAATACATATCTCACGCACGCGTGCCAAAATAAGCTATCCCGCCAGGTTCCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACGGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTTCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCGCCGCCTGGCATGCTCAGGCAGACGGGTATACAGAGT
GAAAGCTCTGCGAATGTTCGCGAACGGGTTATCGCGGCGCAGGCGCGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGAGTGGCTGGAAGAGACGTTGACGCGAT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATCGACCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443