Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PZO51_RS01455 Genome accession   NZ_CP119170
Coordinates   303303..303833 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter mori strain LgD10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 298303..308833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZO51_RS01435 (PZO51_01435) aphA 298627..299340 (+) 714 WP_303569596.1 acid phosphatase AphA -
  PZO51_RS01440 (PZO51_01440) - 299454..299870 (+) 417 WP_042718376.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PZO51_RS01445 (PZO51_01445) - 299873..300226 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  PZO51_RS01450 (PZO51_01450) uvrA 300230..303052 (-) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  PZO51_RS01455 (PZO51_01455) ssb 303303..303833 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PZO51_RS01460 (PZO51_01460) - 303894..304175 (-) 282 WP_003860282.1 YjcB family protein -
  PZO51_RS01465 (PZO51_01465) - 304813..306378 (+) 1566 WP_256460262.1 EAL domain-containing protein -
  PZO51_RS01470 (PZO51_01470) soxS 306385..306711 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  PZO51_RS01475 (PZO51_01475) soxR 306810..307268 (+) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  PZO51_RS01480 (PZO51_01480) - 307636..308307 (+) 672 WP_109492559.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=797998 PZO51_RS01455 WP_023310055.1 303303..303833(+) (ssb) [Enterobacter mori strain LgD10]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=797998 PZO51_RS01455 WP_023310055.1 303303..303833(+) (ssb) [Enterobacter mori strain LgD10]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGACAGAGCCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCCCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364