Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PWH52_RS00755 Genome accession   NZ_CP119084
Coordinates   153027..154544 (-) Length   505 a.a.
NCBI ID   WP_188724478.1    Uniprot ID   -
Organism   Franconibacter daqui strain HNU6-13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 148027..159544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWH52_RS00745 hdfR 151661..152482 (-) 822 WP_338464133.1 HTH-type transcriptional regulator HdfR -
  PWH52_RS00750 - 152602..152940 (+) 339 WP_338464134.1 DUF413 domain-containing protein -
  PWH52_RS00755 comM 153027..154544 (-) 1518 WP_188724478.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PWH52_RS00760 ilvL 154896..154994 (+) 99 WP_049293751.1 ilv operon leader peptide -
  PWH52_RS00765 ilvG 155134..156780 (+) 1647 WP_338464135.1 acetolactate synthase 2 catalytic subunit -
  PWH52_RS00770 ilvM 156777..157034 (+) 258 WP_024555813.1 acetolactate synthase 2 small subunit -
  PWH52_RS00775 - 157052..157990 (+) 939 WP_024555812.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54754.99 Da        Isoelectric Point: 7.8071

>NTDB_id=797604 PWH52_RS00755 WP_188724478.1 153027..154544(-) (comM) [Franconibacter daqui strain HNU6-13]
MSLSVIHTRAALGVNAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNASRLGDVEFVGELALTGALRGVPGAISAAMEALRCGRQIVVAQDNAPEVGLISQQGCLAAQHL
QEVCAWLEGKATLPQPVSTPVETCQAEGDLSEVIGQQQAKRALELTAAGGHNLLFLGPPGTGKTMLASRLNGLLPPLSDE
EALESAAILSLVGAASLHKHWRQRPFRAPHHSASLTAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GHIHISRTRAKISYPARFQLIAAMNPSPTGHYKGPHNRSSPDQVLRYLGRLSGPFLDRFDISLEVPLLPSGTLSQPLTEG
ETTDCVRKRVIATRQRQLERQGKLNALLDNHEIRQHCHLAKTDAQWLEEALIKLGLSVRAWQRLLKVARTIADCEQTQQI
RREHLQEALHYRAIDRLLAYLHNLM

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=797604 PWH52_RS00755 WP_188724478.1 153027..154544(-) (comM) [Franconibacter daqui strain HNU6-13]
ATGTCGCTGTCTGTTATTCATACGCGCGCCGCGCTAGGCGTTAACGCGCCGCTGGTCACGGTTGAAGTACATATCAGTGC
GGGGCTACCCGGCCTGACCATTGTCGGCCTGCCTGAGACTACGGTGAAAGAGGCCCGGGATCGCGTACGTAGCGCACTCA
TCAACAGTGGTTATACCTTTCCGGCGAAGAAGATCACTATCAATTTGGCGCCTGCCGATCTCCCTAAAGAGGGCGGCCGC
TACGATCTGCCTATCGCAATCGCCCTTCTCGCCGCTTCTGAGCAGCTCAATGCCTCCAGGCTGGGGGACGTCGAGTTTGT
TGGCGAACTGGCGCTGACAGGCGCTCTGCGCGGCGTACCGGGAGCCATTTCCGCTGCAATGGAAGCCTTACGCTGCGGTC
GACAAATAGTCGTAGCACAAGATAATGCGCCTGAAGTCGGGCTTATCAGCCAGCAAGGTTGTCTGGCCGCTCAGCATCTT
CAGGAGGTTTGCGCCTGGCTTGAGGGTAAAGCAACGCTACCGCAGCCTGTAAGCACGCCTGTCGAAACGTGCCAGGCTGA
GGGCGACCTCAGCGAGGTTATTGGCCAGCAGCAGGCAAAACGCGCTCTGGAACTGACCGCGGCTGGCGGACATAACTTAC
TCTTTCTCGGTCCGCCTGGAACCGGTAAAACCATGCTGGCGAGCCGCCTTAACGGTTTGCTGCCGCCGCTTAGCGATGAG
GAAGCGCTGGAGAGCGCGGCGATATTAAGCCTCGTTGGCGCAGCCTCGCTGCACAAGCACTGGCGACAACGGCCATTCAG
GGCGCCTCATCACAGCGCCTCGCTAACAGCGATGGTAGGCGGCGGCGCTATTCCGGCGCCGGGTGAAATTTCGCTCGCGC
ATAACGGCGTATTATTTCTCGATGAGCTACCTGAGTTTGAAAGGAGGGTGCTGGATGCATTGCGTGAGCCTATAGAATCG
GGCCATATTCATATCTCCCGTACGCGAGCGAAGATTAGCTACCCTGCCCGCTTCCAGCTTATTGCCGCGATGAATCCCAG
CCCTACGGGGCATTATAAAGGCCCGCATAACCGCAGTTCGCCCGATCAGGTGTTACGTTACCTGGGACGCCTTTCCGGCC
CCTTCCTGGACCGTTTCGATATCTCGCTTGAAGTTCCTCTTCTTCCTTCCGGCACACTCAGCCAGCCGTTAACCGAAGGG
GAAACCACAGACTGCGTCAGGAAACGAGTAATAGCAACGCGTCAGCGGCAGCTGGAGCGACAAGGCAAACTTAATGCATT
ACTGGATAACCATGAGATTCGCCAGCATTGTCATCTGGCAAAAACAGACGCGCAGTGGCTGGAGGAAGCGTTGATAAAAC
TGGGGCTTTCAGTCCGCGCGTGGCAGCGCTTACTGAAAGTGGCGCGGACGATAGCGGATTGTGAGCAAACCCAACAGATC
AGACGGGAGCATCTTCAGGAAGCGCTCCATTATCGCGCCATCGATCGTCTTCTGGCTTATTTACATAACCTTATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.69

100

0.622
  comM Glaesserella parasuis strain SC1401

61.144

100

0.614
  comM Vibrio cholerae strain A1552

60.956

99.406

0.606
  comM Vibrio campbellii strain DS40M4

59.761

99.406

0.594
  comM Legionella pneumophila str. Paris

48.589

98.218

0.477
  comM Legionella pneumophila strain ERS1305867

48.589

98.218

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.604

0.438