Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   PXX05_RS09260 Genome accession   NZ_CP119078
Coordinates   2175949..2176356 (-) Length   135 a.a.
NCBI ID   WP_275087941.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170949..2181356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS09250 (PXX05_09250) letS 2171868..2174602 (+) 2735 Protein_1829 two-component system sensor histidine kinase LetS -
  PXX05_RS09255 (PXX05_09255) - 2174623..2175858 (+) 1236 WP_275087940.1 6-phosphofructokinase -
  PXX05_RS09260 (PXX05_09260) pilA2 2175949..2176356 (-) 408 WP_275087941.1 pilin Machinery gene
  PXX05_RS09265 (PXX05_09265) - 2176583..2176900 (+) 318 WP_275087942.1 BolA family protein -
  PXX05_RS09270 (PXX05_09270) - 2176893..2177330 (+) 438 WP_275087943.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PXX05_RS09275 (PXX05_09275) - 2177334..2177726 (-) 393 WP_275087944.1 hypothetical protein -
  PXX05_RS09280 (PXX05_09280) - 2177967..2179391 (+) 1425 WP_275087945.1 APC family permease -
  PXX05_RS09285 (PXX05_09285) pheA 2179384..2180463 (+) 1080 WP_275087946.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14148.47 Da        Isoelectric Point: 8.4867

>NTDB_id=797546 PXX05_RS09260 WP_275087941.1 2175949..2176356(-) (pilA2) [Legionella cardiaca strain H63]
MKERGFTLIELMIVIAILGVLISLAVPAYRDHIVRAKVVEGLSLASPAKVAVSESAIATHTLPPNQAATGYTSPEPTANV
KSITIGDKGVITITYTPEAGDGTLLLTPTMRTNGQLNWSCVGGSLEAKYRPAGCK

Nucleotide


Download         Length: 408 bp        

>NTDB_id=797546 PXX05_RS09260 WP_275087941.1 2175949..2176356(-) (pilA2) [Legionella cardiaca strain H63]
ATGAAGGAGAGAGGTTTTACATTGATTGAACTAATGATTGTTATCGCTATTTTAGGAGTTTTAATTTCCCTTGCTGTACC
AGCTTATAGAGATCATATCGTCAGAGCAAAAGTTGTTGAAGGATTAAGTTTGGCATCCCCTGCAAAAGTTGCGGTGAGTG
AATCAGCTATTGCGACTCACACCTTACCGCCAAATCAAGCGGCAACGGGATATACTAGTCCAGAACCTACCGCAAATGTG
AAATCTATCACCATTGGTGACAAAGGGGTTATCACCATTACCTATACGCCTGAAGCAGGTGATGGCACTCTGCTGTTAAC
ACCCACAATGAGAACGAATGGGCAATTAAACTGGAGTTGTGTTGGAGGATCCTTAGAGGCAAAATATCGTCCAGCAGGTT
GTAAATAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

60.741

100

0.607
  pilA2 Legionella pneumophila str. Paris

60.741

100

0.607
  pilA Ralstonia pseudosolanacearum GMI1000

41.615

100

0.496
  comP Acinetobacter baylyi ADP1

40

100

0.43
  pilE Neisseria gonorrhoeae MS11

34.395

100

0.4