Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PXX05_RS02190 Genome accession   NZ_CP119078
Coordinates   482285..483796 (-) Length   503 a.a.
NCBI ID   WP_275089418.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477285..488796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS02170 (PXX05_02170) ruvX 477696..478115 (+) 420 WP_275089413.1 Holliday junction resolvase RuvX -
  PXX05_RS02175 (PXX05_02175) - 478118..479020 (+) 903 WP_275089414.1 aspartate carbamoyltransferase catalytic subunit -
  PXX05_RS02180 (PXX05_02180) - 479060..479779 (+) 720 WP_275089416.1 SDR family oxidoreductase -
  PXX05_RS02185 (PXX05_02185) - 479813..482158 (-) 2346 WP_275089417.1 hypothetical protein -
  PXX05_RS02190 (PXX05_02190) comM 482285..483796 (-) 1512 WP_275089418.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PXX05_RS02195 (PXX05_02195) ubiK 483865..484116 (-) 252 WP_275089419.1 ubiquinone biosynthesis accessory factor UbiK -
  PXX05_RS02200 (PXX05_02200) - 484213..484551 (+) 339 WP_275089420.1 P-II family nitrogen regulator -
  PXX05_RS02205 (PXX05_02205) - 484617..485084 (-) 468 WP_275089421.1 EVE domain-containing protein -
  PXX05_RS02210 (PXX05_02210) - 485081..485656 (-) 576 WP_275089422.1 5-formyltetrahydrofolate cyclo-ligase -
  PXX05_RS02215 (PXX05_02215) - 485893..486072 (+) 180 WP_275089423.1 PA3496 family putative envelope integrity protein -
  PXX05_RS02220 (PXX05_02220) - 486078..486911 (+) 834 WP_275089424.1 aminotransferase class IV -
  PXX05_RS02225 (PXX05_02225) - 486903..487553 (-) 651 WP_275089425.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54712.79 Da        Isoelectric Point: 7.8102

>NTDB_id=797536 PXX05_RS02190 WP_275089418.1 482285..483796(-) (comM) [Legionella cardiaca strain H63]
MNLAFSKTRSAVGIHAQPVSVEVHLSNGLPSFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLAPANLPKSGSG
FDLPIAIGILAASGQLPASSLISHEFIGELALSGGLRGVSAIIPVVLAAHRDKQRLIIAAANAQEASLTGYSEVYTATNL
REVCSYLCQNTPLETLPARPETNHVNSNLDWSDIKGQHHAKRAMEIAACGGHSILLSGPPGSGKTMLAKRFSTLLPELTE
TQALECAAINSLRGRLPDFNAWRSPPFRSPHHTASPVALVGGGNPPKPGEISLAHHGILFLDELPEFNRQVLETLREPLE
SGNIWISRAATQIEFPAQFQLLAAMNPCPCGQWGNPNANCLCSPERITRYLAKLSAPLLDRIDMHITVQALTQEELIKPN
TVEGGQSEHIREQVIQIRTKQVSRQNCLNTHLSAKDCEAVCELENEELTFLAEAMNRLKLSARAYHRLLKVARTVADIKN
SEKVDLSALQQALSFKQILQIPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=797536 PXX05_RS02190 WP_275089418.1 482285..483796(-) (comM) [Legionella cardiaca strain H63]
ATGAATCTCGCTTTCAGTAAAACGCGGAGTGCCGTGGGTATTCATGCGCAACCCGTCTCTGTGGAAGTCCATTTATCCAA
TGGCTTGCCTAGTTTCACTATTGTTGGTTTGGCAGAAACCGCCGTGAAAGAAAGTAAAGACAGGGTTCGCAGCGCCATTA
TTAATAGTCAGTTTGAATTTCCCTGTCGCAAAATCACTGTGAACCTCGCCCCCGCAAACTTACCTAAATCTGGAAGTGGT
TTTGATTTACCCATCGCTATCGGCATCCTTGCCGCCTCAGGACAGCTACCCGCATCGTCTTTAATTTCTCATGAATTCAT
TGGGGAGCTTGCCTTAAGTGGTGGCCTACGTGGTGTATCCGCTATTATCCCTGTCGTCTTGGCTGCTCATCGAGATAAAC
AACGACTTATCATTGCTGCTGCCAACGCGCAAGAAGCCTCCCTGACAGGCTATAGTGAGGTGTATACTGCAACAAATCTA
CGCGAAGTTTGCAGCTATTTATGTCAAAATACCCCTCTGGAAACACTGCCTGCTCGCCCAGAAACAAATCATGTGAACTC
CAACCTGGATTGGTCTGATATTAAAGGCCAACATCATGCAAAACGAGCCATGGAAATTGCGGCTTGCGGTGGTCATAGCA
TTTTATTAAGTGGTCCTCCAGGAAGTGGCAAAACAATGCTAGCCAAACGCTTTAGCACATTACTTCCTGAACTCACTGAA
ACACAAGCTTTGGAATGCGCGGCTATTAATTCCCTTCGCGGACGTCTTCCTGATTTTAATGCATGGCGCTCTCCTCCTTT
TCGTTCCCCACATCATACCGCGTCTCCCGTTGCCTTGGTTGGTGGAGGTAACCCACCTAAACCCGGTGAAATCTCCCTGG
CCCACCATGGCATTCTTTTTCTTGACGAACTACCAGAATTTAACAGACAAGTGCTGGAGACTTTGCGGGAACCCTTAGAA
TCAGGAAATATTTGGATTTCACGAGCAGCCACTCAAATCGAATTCCCCGCCCAATTTCAACTTCTGGCAGCAATGAATCC
CTGTCCTTGCGGACAATGGGGAAATCCAAACGCAAATTGCTTATGTAGTCCTGAACGTATAACACGTTATCTTGCAAAAT
TATCAGCGCCGTTATTGGACAGAATTGACATGCACATTACTGTTCAAGCCTTAACGCAAGAGGAATTAATTAAGCCAAAT
ACCGTTGAAGGAGGACAAAGCGAGCATATCCGAGAACAGGTTATTCAAATAAGAACCAAACAAGTATCAAGACAAAATTG
TCTTAATACACATTTAAGTGCTAAAGATTGCGAAGCAGTTTGTGAATTAGAAAATGAAGAATTGACCTTTTTAGCTGAAG
CAATGAATCGCCTTAAATTATCAGCTCGAGCCTATCACCGTCTACTCAAGGTTGCAAGAACAGTTGCTGACATAAAAAAC
TCTGAAAAAGTAGATCTCAGCGCACTGCAACAAGCTTTATCTTTCAAGCAAATATTGCAAATACCAAAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

76.938

100

0.769
  comM Legionella pneumophila str. Paris

76.938

100

0.769
  comM Haemophilus influenzae Rd KW20

51.479

100

0.519
  comM Vibrio campbellii strain DS40M4

49.016

100

0.495
  comM Vibrio cholerae strain A1552

49.105

100

0.491
  comM Glaesserella parasuis strain SC1401

48.8

99.404

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.578

99.006

0.441