Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PYW33_RS01130 Genome accession   NZ_CP118963
Coordinates   274553..276043 (-) Length   496 a.a.
NCBI ID   WP_004644903.1    Uniprot ID   N8NTG8
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269553..281043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS01105 - 270225..270605 (-) 381 WP_004644898.1 hypothetical protein -
  PYW33_RS01110 - 270706..271104 (+) 399 WP_004644899.1 MAPEG family protein -
  PYW33_RS01115 ppa 271222..271758 (+) 537 WP_004644900.1 inorganic diphosphatase -
  PYW33_RS01120 - 271854..273173 (-) 1320 WP_004644901.1 OprD family outer membrane porin -
  PYW33_RS01125 - 273772..274506 (+) 735 WP_004644902.1 TorF family putative porin -
  PYW33_RS01130 comM 274553..276043 (-) 1491 WP_004644903.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PYW33_RS01135 - 276110..276337 (-) 228 WP_004644904.1 accessory factor UbiK family protein -
  PYW33_RS01140 glnK 276615..276953 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  PYW33_RS01145 - 277013..278425 (+) 1413 WP_004644905.1 ammonium transporter -
  PYW33_RS01150 nrdR 278566..279030 (+) 465 WP_004281044.1 transcriptional regulator NrdR -
  PYW33_RS01155 ribD 279033..280121 (+) 1089 WP_004644907.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54473.42 Da        Isoelectric Point: 7.2190

>NTDB_id=796901 PYW33_RS01130 WP_004644903.1 274553..276043(-) (comM) [Acinetobacter lwoffii strain DSM 2403]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEDCTEHLEFIGELALDGQLRPVSGTLSIAIACQSDQHQLILPGPNAQEACQLPDFKVFAANHL
KEVCEHLSQAQRLPQIEAGPLATDHFYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPAE
DSETVRQRVIAAYEIQMQRQNTLNMSLSPKQLEQYAALDQSAQKMLEIAQQKLNLSARGYHRVLRVARTIADLNQSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=796901 PYW33_RS01130 WP_004644903.1 274553..276043(-) (comM) [Acinetobacter lwoffii strain DSM 2403]
ATGTCTTTTGCTAAAATTTATACGCGAGGCTTGCTGGGCCTGCATGCGCCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
GGGTATGCCTTCACTCACTATAGTGGGGCTTCCCGAAGCAGCGGTACGTGAAAGTAAAGACCGGGTACGCTCTGCCATTT
TGAATAGCGGCTTTCAATTTCCGACCAAACGTCTGACCATTAATCTGGCGCCAGCAGATCTACCGAAAGATGGATCACGT
CTGGATTTACCGATTGCATTAGGCATTTTAGTGGCTTCAGGCCAGCTGCCTGAAGATTGTACTGAGCATCTGGAGTTTAT
TGGCGAGTTGGCCCTCGATGGTCAATTACGTCCTGTCAGCGGCACCTTAAGTATTGCCATTGCCTGTCAAAGTGACCAGC
ATCAACTGATTTTGCCTGGCCCCAATGCACAGGAAGCCTGTCAGCTCCCAGACTTTAAAGTCTTTGCAGCCAATCATTTA
AAAGAAGTGTGTGAACATCTTTCCCAAGCGCAGCGCTTGCCGCAAATAGAAGCCGGCCCACTCGCTACAGACCATTTTTA
TAAGTTTGATCTTGCGGATGTAAAAGGACAATTACGACCACGGCGTGCTTTAGAAATTGCCGCGGCAGGTGGTCATTCCC
TGCTGTTCCGAGGCCCCCCTGGAACAGGCAAGACCTTGCTAGCTTCTCGATTGGCCAGTATTTTACCGCCCTTAAAGACG
CAGGAAAATCTGGAAGTGGCCAGTATTTATTCGGTGGCGAATGCCAATCACCCTTTTGGGCAACGGCCTTTTCGAGCACC
GCACCATACTGCTTCTGCAGTAGCATTGGTCGGTGGCGGCTCACACCCCAAACCAGGAGAAATTACCCTGGCACATTTAG
GGGTTTTATTTCTGGACGAGCTACCAGAATTTGACCGTAAAGTTTTGGAAGTCTTACGGCAGCCTTTGGAGGCAAAGGAA
ATTGTTATTTCCCGGGCATCACGCCAAATTACCTTTCCGGCTAATTTCCAGTTAGTAGCTGCCATGAATCCCTGTCCATG
TGGGTATGCATTCAATCAGGATATCCGTTGCCAATGTTCGCCGGAAAGTATTAAGCGCTATCAGAACCGGATTTCAGGCC
CCCTGCTGGATCGGATTGATTTGCATATTGATGTACCGCCATTACAGGCGCATGAGCTACAGGACAATCGACCCGCCGAA
GACTCCGAAACGGTCAGACAGCGCGTCATTGCAGCCTATGAAATTCAGATGCAACGGCAAAATACCTTGAATATGAGTTT
GAGTCCAAAACAGCTAGAGCAATATGCCGCATTAGATCAGTCTGCCCAGAAGATGCTTGAAATAGCTCAGCAAAAACTGA
ATTTATCAGCACGTGGCTATCATCGGGTCTTGCGTGTTGCACGCACCATTGCCGATTTAAATCAAAGTCCAGATATTCAA
AGTCAGCATCTTTCGGAGGCCCTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8NTG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

51.21

100

0.512
  comM Legionella pneumophila str. Paris

51.21

100

0.512
  comM Haemophilus influenzae Rd KW20

50.902

100

0.512
  comM Glaesserella parasuis strain SC1401

50

100

0.508
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Vibrio campbellii strain DS40M4

49.6

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.478