Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PYW30_RS02280 Genome accession   NZ_CP118950
Coordinates   456940..458100 (+) Length   386 a.a.
NCBI ID   WP_232254510.1    Uniprot ID   -
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451940..463100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS02265 - 453316..454872 (+) 1557 WP_004259192.1 ABC-F family ATP-binding cassette domain-containing protein -
  PYW30_RS02270 - 455037..456212 (+) 1176 WP_004259189.1 SLC13 family permease -
  PYW30_RS02275 - 456270..456920 (+) 651 WP_042217284.1 helix-hairpin-helix domain-containing protein -
  PYW30_RS02280 comEC 456940..458100 (+) 1161 WP_232254510.1 ComEC/Rec2 family competence protein Machinery gene
  PYW30_RS02285 comEC 458037..459083 (+) 1047 WP_232254558.1 ComEC/Rec2 family competence protein Machinery gene
  PYW30_RS02290 - 459238..460014 (+) 777 WP_042217333.1 alpha/beta hydrolase family protein -
  PYW30_RS02295 - 460210..460425 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  PYW30_RS02300 atpB 460480..461193 (+) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  PYW30_RS02305 atpF 461207..461713 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  PYW30_RS02310 - 461728..462255 (+) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 45567.20 Da        Isoelectric Point: 9.8162

>NTDB_id=796681 PYW30_RS02280 WP_232254510.1 456940..458100(+) (comEC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MKQKFSLIYFVYLLVFVYFLIFSFSWPLLILSLFSFFIAFYRQYYSVLVLLLCFSLFLLMIKKETEVQERKQPEKISKIT
PYMDTLQVNGSRLSFRGEVNGNDFQAFYTLTSEKEKEYFKKLAVKGTFYLEGTLEIPEEQRNFSGFDYRKYLRTQGVYRL
LKIEKIHGFEEKQDFDLRLVRRKAILWAQKHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRLGLSQKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSDRFSVTFLLLMVFSPYFLLTTGGQLTML
YSFLITFFSGKFKELKGLKKSLLDSTVLAVGVLPLLIFYFCQVYFLSFFFLYLVLLSHYLILFLLF

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=796681 PYW30_RS02280 WP_232254510.1 456940..458100(+) (comEC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGAAACAAAAATTTTCGCTAATCTATTTCGTTTATCTCTTAGTCTTTGTTTATTTTCTTATTTTTAGTTTTTCATGGCC
TTTACTTATTCTTAGTCTCTTTAGTTTCTTCATCGCTTTTTATCGTCAATACTATAGTGTGTTAGTTCTTTTACTGTGCT
TTAGTTTATTCTTACTCATGATAAAAAAAGAAACGGAAGTACAAGAAAGAAAGCAACCAGAAAAAATTTCGAAAATTACC
CCTTATATGGATACTCTTCAAGTAAATGGAAGCAGGCTCAGTTTCAGAGGAGAAGTGAACGGCAACGACTTCCAAGCTTT
TTACACCTTGACCTCGGAAAAAGAAAAAGAATACTTCAAAAAACTTGCGGTGAAGGGGACTTTTTACCTTGAAGGCACTT
TGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGGAAGTATTTAAGGACTCAAGGGGTCTATCGTCTT
CTTAAAATAGAAAAAATTCATGGATTTGAAGAAAAACAGGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTTG
GGCTCAGAAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCTTCTTTTTGGGTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAGCTTTACACCAGTCTTGGCATTATCCATTTATTTGCGCTGTCAGGTATGCAGGTGAATTTTTTTATTGAA
CTTCTCCGAAATATTTTACTGCGGCTTGGCTTATCACAGAAGTTAGTCTTTTTTATCCAAATTCCCTTTTCGATATTTTA
TGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGCGCGCTTCTTCAAAAAAATATCCCCCTTAAAAATTCAAGCGATA
GATTTTCTGTCACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCCTGCTGACAACAGGCGGACAACTCACGATGCTT
TATTCTTTCTTAATCACATTTTTTTCAGGAAAGTTCAAAGAACTAAAAGGATTAAAAAAATCGTTACTTGATTCTACCGT
CCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTTACTTCTGCCAGGTTTACTTTTTATCTTTCTTCTTTCTTTATTTGG
TACTGCTCTCACATTATTTAATCCTTTTTTTATTGTTTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-166)

Competence protein (Competence)

(203-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

54.342

92.487

0.503
  comEC/celB Streptococcus pneumoniae Rx1

42.64

100

0.435
  comEC/celB Streptococcus pneumoniae D39

42.64

100

0.435
  comEC/celB Streptococcus pneumoniae R6

42.64

100

0.435
  comEC/celB Streptococcus mitis SK321

45.109

95.337

0.43
  comEC/celB Streptococcus pneumoniae TIGR4

43.989

94.819

0.417
  comEC/celB Streptococcus mitis NCTC 12261

43.443

94.819

0.412