NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	PX335_RS01145	Genome accession	NZ_CP118933
Coordinates	239744..241231 (-)	Length	495 a.a.
NCBI ID	WP_017385860.1	Uniprot ID	A0A1C2TTX8
Organism	Acinetobacter pittii strain ML4
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 234744..246231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX335_RS01115 (PX335_01115)	-	234774..234962 (+)	189	WP_017385854.1	hypothetical protein	-
PX335_RS01120 (PX335_01120)	-	235001..235813 (+)	813	WP_017385855.1	TorF family putative porin	-
PX335_RS01125 (PX335_01125)	-	235855..236733 (-)	879	WP_017385856.1	dihydrodipicolinate synthase family protein	-
PX335_RS01130 (PX335_01130)	-	236749..237525 (-)	777	WP_017385857.1	aldolase	-
PX335_RS01135 (PX335_01135)	mocR	237637..239070 (+)	1434	WP_017385858.1	PLP-dependent aminotransferase family protein	-
PX335_RS01140 (PX335_01140)	yieF	239095..239640 (-)	546	WP_017385859.1	NADPH-dependent FMN reductase	-
PX335_RS01145 (PX335_01145)	comM	239744..241231 (-)	1488	WP_017385860.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PX335_RS01150 (PX335_01150)	-	241297..241524 (-)	228	WP_002121136.1	accessory factor UbiK family protein	-
PX335_RS01155 (PX335_01155)	glnK	241803..242141 (+)	339	WP_000780326.1	P-II family nitrogen regulator	-
PX335_RS01160 (PX335_01160)	amtB	242199..243596 (+)	1398	WP_017385861.1	ammonium transporter	-
PX335_RS01165 (PX335_01165)	nrdR	243720..244178 (+)	459	WP_000543541.1	transcriptional regulator NrdR	-
PX335_RS01170 (PX335_01170)	ribD	244194..245279 (+)	1086	WP_017385862.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54499.59 Da Isoelectric Point: 7.7209

                                >NTDB_id=796485 PX335_RS01145 WP_017385860.1 239744..241231(-) (comM) [Acinetobacter pittii strain ML4]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMFEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=796485 PX335_RS01145 WP_017385860.1 239744..241231(-) (comM) [Acinetobacter pittii strain ML4]

ATGTCCTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAGGTCGAGGTACATGTGAGTCA

AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTATCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGCCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCACATACCTTTGGACAGCGTCCATTTCGGGCGCC

CCACCATACGGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCACTTGAATCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGTTTGAAATGGCTCAACAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTCGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1C2TTX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.605	100	0.507
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.197	100	0.495
comM	Legionella pneumophila strain ERS1305867	49.197	100	0.495
comM	Haemophilus influenzae Rd KW20	48.697	100	0.491
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.726	100	0.465

Detailed information NTG0796485