Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PXW05_RS21675 Genome accession   NZ_CP118932
Coordinates   4537039..4537569 (-) Length   176 a.a.
NCBI ID   WP_275095216.1    Uniprot ID   -
Organism   Serratia marcescens strain RX11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4532039..4542569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXW05_RS21645 (PXW05_21645) - 4532581..4533024 (-) 444 WP_004936812.1 lipocalin-like domain-containing protein -
  PXW05_RS21650 (PXW05_21650) - 4533220..4533480 (+) 261 WP_004936809.1 YdgH/BhsA/McbA-like domain containing protein -
  PXW05_RS21655 (PXW05_21655) - 4533536..4534453 (-) 918 WP_004936806.1 LysR family transcriptional regulator -
  PXW05_RS21660 (PXW05_21660) - 4534581..4535330 (+) 750 WP_004936803.1 3-oxoacyl-ACP reductase family protein -
  PXW05_RS21665 (PXW05_21665) - 4535564..4535776 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  PXW05_RS21670 (PXW05_21670) - 4535997..4536953 (+) 957 WP_049189118.1 cyclase family protein -
  PXW05_RS21675 (PXW05_21675) ssb 4537039..4537569 (-) 531 WP_275095216.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PXW05_RS21680 (PXW05_21680) uvrA 4537847..4540675 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  PXW05_RS21685 (PXW05_21685) - 4540905..4541957 (+) 1053 WP_275095217.1 NAD(P)-dependent alcohol dehydrogenase -
  PXW05_RS21690 (PXW05_21690) maa 4541988..4542545 (-) 558 WP_004936785.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18838.74 Da        Isoelectric Point: 5.2358

>NTDB_id=796474 PXW05_RS21675 WP_275095216.1 4537039..4537569(-) (ssb) [Serratia marcescens strain RX11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGTPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=796474 PXW05_RS21675 WP_275095216.1 4537039..4537569(-) (ssb) [Serratia marcescens strain RX11]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCACACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.614
  ssb Neisseria meningitidis MC58

46.023

100

0.46
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.46
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364