Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O6P42_RS01785 Genome accession   NZ_CP118930
Coordinates   384950..385489 (+) Length   179 a.a.
NCBI ID   WP_115386325.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379950..390489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS01770 (O6P42_01770) uvrA 380024..382846 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  O6P42_RS01775 (O6P42_01775) galU 382996..383868 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O6P42_RS01780 (O6P42_01780) qstR 384028..384672 (-) 645 WP_054866251.1 LuxR C-terminal-related transcriptional regulator Regulator
  O6P42_RS01785 (O6P42_01785) ssb 384950..385489 (+) 540 WP_115386325.1 single-stranded DNA-binding protein Machinery gene
  O6P42_RS01790 (O6P42_01790) csrD 385744..387753 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  O6P42_RS01795 (O6P42_01795) - 387765..389210 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  O6P42_RS01800 (O6P42_01800) gspM 389207..389857 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  O6P42_RS01805 (O6P42_01805) - 389850..390182 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9164

>NTDB_id=796419 O6P42_RS01785 WP_115386325.1 384950..385489(+) (ssb) [Vibrio alginolyticus strain V208]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=796419 O6P42_RS01785 WP_115386325.1 384950..385489(+) (ssb) [Vibrio alginolyticus strain V208]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458