Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   O6P42_RS01780 Genome accession   NZ_CP118930
Coordinates   384028..384672 (-) Length   214 a.a.
NCBI ID   WP_054866251.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 379028..389672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS01770 (O6P42_01770) uvrA 380024..382846 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  O6P42_RS01775 (O6P42_01775) galU 382996..383868 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O6P42_RS01780 (O6P42_01780) qstR 384028..384672 (-) 645 WP_054866251.1 LuxR C-terminal-related transcriptional regulator Regulator
  O6P42_RS01785 (O6P42_01785) ssb 384950..385489 (+) 540 WP_115386325.1 single-stranded DNA-binding protein Machinery gene
  O6P42_RS01790 (O6P42_01790) csrD 385744..387753 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  O6P42_RS01795 (O6P42_01795) - 387765..389210 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24457.42 Da        Isoelectric Point: 9.8721

>NTDB_id=796418 O6P42_RS01780 WP_054866251.1 384028..384672(-) (qstR) [Vibrio alginolyticus strain V208]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYFEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=796418 O6P42_RS01780 WP_054866251.1 384028..384672(-) (qstR) [Vibrio alginolyticus strain V208]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTTTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.393

100

0.944
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519