Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PX343_RS22485 Genome accession   NZ_CP118927
Coordinates   4745111..4746631 (+) Length   506 a.a.
NCBI ID   WP_275055418.1    Uniprot ID   -
Organism   Citrobacter koseri strain L2395     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4740111..4751631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX343_RS22465 (PX343_22465) ilvE 4741668..4742597 (-) 930 WP_012131120.1 branched-chain-amino-acid transaminase -
  PX343_RS22470 (PX343_22470) ilvM 4742615..4742878 (-) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  PX343_RS22475 (PX343_22475) ilvG 4742875..4744521 (-) 1647 WP_071258124.1 acetolactate synthase 2 catalytic subunit -
  PX343_RS23725 ilvX 4744524..4744574 (-) 51 WP_202401504.1 peptide IlvX -
  PX343_RS22480 (PX343_22480) ilvL 4744661..4744759 (-) 99 WP_001311244.1 ilv operon leader peptide -
  PX343_RS22485 (PX343_22485) comM 4745111..4746631 (+) 1521 WP_275055418.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PX343_RS22490 (PX343_22490) maoP 4746658..4746996 (-) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  PX343_RS22495 (PX343_22495) hdfR 4747103..4747948 (+) 846 WP_161799994.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55086.15 Da        Isoelectric Point: 7.4365

>NTDB_id=796408 PX343_RS22485 WP_275055418.1 4745111..4746631(+) (comM) [Citrobacter koseri strain L2395]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENATEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQEKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=796408 PX343_RS22485 WP_275055418.1 4745111..4746631(+) (comM) [Citrobacter koseri strain L2395]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCCCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGAGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCAATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATGCAACAGAAGTTGGGCTAATCAGCGGAGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGCGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGACGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTGGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAACGACGCACGCTGGATGCGCTACGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGATTGCAGCAATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCACCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGAGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAGACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.203

100

0.589
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

47.4

98.814

0.468
  comM Legionella pneumophila strain ERS1305867

47.4

98.814

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437