Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PYV58_RS01065 Genome accession   NZ_CP118892
Coordinates   234546..236033 (-) Length   495 a.a.
NCBI ID   WP_034612656.1    Uniprot ID   A0AAX3PLZ8
Organism   Acinetobacter sp. TAC-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 229546..241033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01035 (PYV58_01035) ppa 229635..230159 (+) 525 WP_004725270.1 inorganic diphosphatase -
  PYV58_RS01040 (PYV58_01040) - 230263..231588 (-) 1326 WP_034612675.1 OprD family outer membrane porin -
  PYV58_RS01045 (PYV58_01045) - 231898..232668 (+) 771 WP_034612672.1 TorF family putative porin -
  PYV58_RS01050 (PYV58_01050) - 232932..233171 (+) 240 WP_034612669.1 hypothetical protein -
  PYV58_RS01055 (PYV58_01055) - 233168..233938 (+) 771 WP_034612664.1 TorF family putative porin -
  PYV58_RS01060 (PYV58_01060) - 234003..234512 (-) 510 WP_275059689.1 N-acetyltransferase -
  PYV58_RS01065 (PYV58_01065) comM 234546..236033 (-) 1488 WP_034612656.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PYV58_RS01070 (PYV58_01070) - 236105..236332 (-) 228 WP_004725282.1 accessory factor UbiK family protein -
  PYV58_RS01075 (PYV58_01075) glnK 236624..236962 (+) 339 WP_004725283.1 P-II family nitrogen regulator -
  PYV58_RS01080 (PYV58_01080) - 237030..238436 (+) 1407 WP_004816553.1 ammonium transporter -
  PYV58_RS01085 (PYV58_01085) nrdR 238581..239045 (+) 465 WP_004725286.1 transcriptional regulator NrdR -
  PYV58_RS01090 (PYV58_01090) ribD 239078..240190 (+) 1113 WP_004816555.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54625.82 Da        Isoelectric Point: 7.9934

>NTDB_id=796087 PYV58_RS01065 WP_034612656.1 234546..236033(-) (comM) [Acinetobacter sp. TAC-1]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENVTDHFEFIGELALDGHLRPITGTLTIAMACQMAKHQLMLPQENAAEAAQLPEFQVFAAQHL
KQVCEHFLNLQKIDATARQKIPQDNTYKFDLADVKGQLRPRRALEISAAGGHSLLFKGPPGTGKTLLASRLPSILPALNP
QENLEVASIYSIAKTKHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLKAQELQNQTPVE
DSATVRERVIDACDFQIQRQGYLNHNLSPKDLEKYVILDETSKQMLEMAQQRLNLSARAYHRILRVSRTIADLAQSEQIQ
STHLTEALSYRGTQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=796087 PYV58_RS01065 WP_034612656.1 234546..236033(-) (comM) [Acinetobacter sp. TAC-1]
ATGTCTTTAGCCAAAATTTATACCCGAGGTTTGCTCGGGCTGCATGCACCTTTAATTGAAGTTGAGGTCCATGTTAGTGC
AGGGCTGCCTTCTTTAACAATTGTTGGCTTAGCTGAAGCAGCAGTTCGTGAAAGTAAGGATCGTGTTCGATCTGCCATTA
TTAATAGTGGTTATCAATTCCCTACCAAGCGCTTAACCATCAATCTCGCACCTGCGGATCTTCCTAAAGATGGCTCTCGT
TTAGATCTGCCCATTGCACTCGGTATCTTGATTGCCACAGGGCAACTTCCTGAAAATGTCACAGATCATTTTGAGTTTAT
TGGTGAATTAGCGTTGGATGGACACTTAAGACCAATTACAGGGACCTTAACCATTGCAATGGCATGTCAAATGGCCAAGC
ATCAATTGATGTTGCCGCAGGAAAATGCTGCTGAAGCAGCGCAATTGCCTGAGTTTCAGGTATTTGCTGCACAGCACCTA
AAACAAGTCTGTGAGCATTTCTTAAATTTACAAAAAATTGATGCAACCGCTCGGCAAAAAATACCGCAAGACAATACCTA
CAAATTTGATTTGGCAGATGTCAAAGGGCAATTACGCCCACGACGCGCTTTAGAAATTTCAGCAGCAGGTGGACATTCGC
TTTTATTTAAAGGCCCACCGGGTACAGGTAAAACCCTGTTAGCGTCACGCTTACCGAGTATTTTGCCAGCCTTAAATCCA
CAAGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAAGACCAAACACCATTTTGGACAGCGCCCATTTCGTGCCCC
GCACCATACCGCGTCTGCAATCGCTCTTGTCGGTGGCGGTTCAAATCCCAAACCCGGAGAAATTACGCTGGCGCACTTAG
GGGTGCTATTTTTAGACGAGCTGCCTGAGTTTGACAAAAAAGTGCTCGAAGTTTTAAGGCAACCGCTTGAATCTAAAGAA
ATCGTTATCTCTAGAGCATCACGCCAAATTACATTTCCCGCCAACTTTCAATTGATTGCAGCAATGAACCCCTGCCCTTG
TGGTTATGCATTTAATCAAGACAGTCGCTGCCAATGTTCGGCTGAAGCAATTAAGCGCTATCAAAATCGAATTTCAGGTC
CATTATTGGATCGCATTGATTTACATATCGATGTGCCACCATTAAAAGCCCAAGAATTACAGAATCAAACGCCTGTCGAA
GATTCAGCAACAGTACGGGAACGGGTGATTGATGCGTGCGATTTTCAAATTCAAAGACAAGGCTATTTAAATCACAACTT
ATCGCCAAAAGACTTAGAAAAATATGTGATTTTAGATGAAACATCCAAGCAGATGCTGGAAATGGCACAACAACGTTTGA
ATTTATCTGCGCGGGCATATCATCGTATTTTACGTGTTTCAAGGACCATTGCAGATTTGGCTCAAAGTGAGCAAATCCAA
AGTACCCATTTAACCGAAGCCTTGTCATATCGGGGAACTCAATCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.098

100

0.517
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Legionella pneumophila str. Paris

49.402

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.402

100

0.501
  comM Vibrio cholerae strain A1552

49.899

100

0.499
  comM Vibrio campbellii strain DS40M4

49.697

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.465