Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HIY_RS09395 Genome accession   NZ_AP022867
Coordinates   1848845..1850374 (+) Length   509 a.a.
NCBI ID   WP_053521089.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018-Y40     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1843845..1855374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIY_RS09365 (HIY_18240) - 1843889..1844860 (+) 972 WP_005657280.1 ABC transporter ATP-binding protein -
  HIY_RS09370 (HIY_18250) oppF 1844857..1845855 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  HIY_RS09375 (HIY_18260) - 1845934..1846287 (+) 354 WP_005655582.1 helix-turn-helix domain-containing protein -
  HIY_RS09380 (HIY_18270) - 1846275..1847093 (+) 819 WP_229293790.1 IS3 family transposase -
  HIY_RS09385 (HIY_18280) - 1847142..1848008 (-) 867 WP_005657285.1 VirK/YbjX family protein -
  HIY_RS09390 (HIY_18290) yihA 1848113..1848730 (+) 618 WP_005657287.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HIY_RS09395 (HIY_18300) comM 1848845..1850374 (+) 1530 WP_053521089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HIY_RS09400 (HIY_18310) deoC 1850408..1851079 (-) 672 WP_005657292.1 deoxyribose-phosphate aldolase -
  HIY_RS09405 (HIY_18320) - 1851189..1851692 (+) 504 WP_005657295.1 protein disulfide oxidoreductase -
  HIY_RS09410 (HIY_18330) rfaD 1851745..1852671 (+) 927 WP_005657299.1 ADP-glyceromanno-heptose 6-epimerase -
  HIY_RS09415 (HIY_18340) xylB 1852722..1854203 (-) 1482 WP_005657303.1 xylulokinase -
  HIY_RS09420 (HIY_18350) - 1854296..1854649 (+) 354 WP_005655582.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55934.45 Da        Isoelectric Point: 9.8668

>NTDB_id=79574 HIY_RS09395 WP_053521089.1 1848845..1850374(+) (comM) [Haemophilus influenzae strain 2018-Y40]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASEQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLSTEIMKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQIERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=79574 HIY_RS09395 WP_053521089.1 1848845..1850374(+) (comM) [Haemophilus influenzae strain 2018-Y40]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGACCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCCGCATCGGAGCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCGGAGCTTGCGCTGACGGGGCAATTACGTGGTGTACATGGCGTGATCCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACCCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCTCCACTGAAATTATGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCGCATCATAGTGCATCAATGCCTGCTTTAGTTGGTGGCGGGACAATCCCTAAACCTGGCG
AAATATCCTTAGCCACAAATGGGGTACTGTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCGCTACGC
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCCAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATAGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGCGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATAGAGCAATGGATCGTTTGTTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.625

100

0.986
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

66.272

99.607

0.66
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.796

100

0.473

Multiple sequence alignment