Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYH58_RS07315 Genome accession   NZ_CP118813
Coordinates   1507974..1508291 (-) Length   105 a.a.
NCBI ID   WP_353462104.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 7061     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502974..1513291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH58_RS07285 (PYH58_07285) gcvPA 1503513..1504856 (-) 1344 WP_353462100.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PYH58_RS07290 (PYH58_07290) gcvT 1504868..1505956 (-) 1089 WP_353463958.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH58_RS07295 (PYH58_07295) - 1506150..1506638 (-) 489 WP_353462101.1 shikimate kinase -
  PYH58_RS07300 (PYH58_07300) - 1506873..1507307 (-) 435 WP_353462102.1 competence type IV pilus minor pilin ComGF -
  PYH58_RS07305 (PYH58_07305) comGE 1507282..1507563 (-) 282 WP_037588271.1 competence type IV pilus minor pilin ComGE -
  PYH58_RS07310 (PYH58_07310) comGD 1507547..1507996 (-) 450 WP_353462103.1 competence type IV pilus minor pilin ComGD -
  PYH58_RS07315 (PYH58_07315) comGC 1507974..1508291 (-) 318 WP_353462104.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH58_RS07320 (PYH58_07320) comGB 1508307..1509347 (-) 1041 WP_353462105.1 competence type IV pilus assembly protein ComGB -
  PYH58_RS07325 (PYH58_07325) comGA 1509337..1510239 (-) 903 WP_353462106.1 competence type IV pilus ATPase ComGA -
  PYH58_RS07330 (PYH58_07330) - 1510393..1510641 (+) 249 WP_025904960.1 DUF2626 family protein -
  PYH58_RS07335 (PYH58_07335) - 1510677..1511309 (-) 633 WP_353462107.1 MBL fold metallo-hydrolase -
  PYH58_RS07340 (PYH58_07340) - 1511407..1511646 (+) 240 WP_016911885.1 DUF2759 domain-containing protein -
  PYH58_RS07345 (PYH58_07345) - 1511676..1511990 (-) 315 WP_037588286.1 MTH1187 family thiamine-binding protein -
  PYH58_RS07350 (PYH58_07350) - 1511990..1512961 (-) 972 WP_262650464.1 ROK family glucokinase -
  PYH58_RS07355 (PYH58_07355) - 1512958..1513149 (-) 192 WP_078099923.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11544.62 Da        Isoelectric Point: 9.5861

>NTDB_id=795496 PYH58_RS07315 WP_353462104.1 1507974..1508291(-) (comGC) [Mammaliicoccus sciuri strain 7061]
MKRFKFLSKKEGFTLVEKLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSAG
YINQKQLTCKSGETITLENGEVVAH

Nucleotide


Download         Length: 318 bp        

>NTDB_id=795496 PYH58_RS07315 WP_353462104.1 1507974..1508291(-) (comGC) [Mammaliicoccus sciuri strain 7061]
ATGAAAAGATTTAAATTTTTAAGTAAAAAAGAAGGATTTACATTGGTAGAGAAGCTAATAGTTCTTTTAATAATAAGTAT
ATTATTGGTGATCATCATACCAAACATAAGTAAGCAATCAGAGACGGTAAAAAGTACTGGATGCCAAGCTCAAGTGAAGA
TGGTTGCTGGACAAGTAGAAGCTTATACATTGAAGCACGATGCTAAACCAAATTCTATAAATGATTTAGTAAGTGCTGGT
TATATTAATCAAAAGCAACTGACATGTAAATCAGGTGAAACAATTACACTTGAAAATGGTGAAGTTGTTGCACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

62.745

97.143

0.61
  comGC Staphylococcus aureus N315

62.745

97.143

0.61
  comGC Bacillus subtilis subsp. subtilis str. 168

46.237

88.571

0.41
  comYC Streptococcus mutans UA140

48.276

82.857

0.4
  comYC Streptococcus mutans UA159

48.276

82.857

0.4
  comYC Streptococcus gordonii str. Challis substr. CH1

48.837

81.905

0.4
  comGC Lactococcus lactis subsp. cremoris KW2

46.914

77.143

0.362