Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q8X46_RS21955 Genome accession   NZ_CP132063
Coordinates   4474308..4474844 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain QML220601     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4469308..4479844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X46_RS21935 (Q8X46_21935) soxR 4471036..4471500 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  Q8X46_RS21940 (Q8X46_21940) soxS 4471586..4471909 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  Q8X46_RS21945 (Q8X46_21945) pdeC 4471912..4473498 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  Q8X46_RS21950 (Q8X46_21950) yjcB 4473928..4474209 (+) 282 WP_001295689.1 YjcB family protein -
  Q8X46_RS21955 (Q8X46_21955) ssb 4474308..4474844 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Q8X46_RS21960 (Q8X46_21960) uvrA 4475098..4477920 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  Q8X46_RS21965 (Q8X46_21965) yjbR 4477955..4478311 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  Q8X46_RS21970 (Q8X46_21970) yjbQ 4478315..4478731 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  Q8X46_RS21975 (Q8X46_21975) aphA 4478842..4479555 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=795352 Q8X46_RS21955 WP_000168305.1 4474308..4474844(-) (ssb) [Escherichia coli strain QML220601]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=795352 Q8X46_RS21955 WP_000168305.1 4474308..4474844(-) (ssb) [Escherichia coli strain QML220601]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489