Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | PYH60_RS06295 | Genome accession | NZ_CP118800 |
| Coordinates | 1228852..1229748 (+) | Length | 298 a.a. |
| NCBI ID | WP_135031058.1 | Uniprot ID | - |
| Organism | Mammaliicoccus lentus strain 7066 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1223852..1234748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH60_RS06255 (PYH60_06255) | - | 1223908..1224462 (+) | 555 | WP_064204534.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| PYH60_RS06260 (PYH60_06260) | - | 1224463..1225911 (+) | 1449 | WP_239724181.1 | rhomboid family intramembrane serine protease | - |
| PYH60_RS06265 (PYH60_06265) | - | 1225914..1226105 (+) | 192 | WP_017000229.1 | YqgQ family protein | - |
| PYH60_RS06270 (PYH60_06270) | - | 1226102..1227073 (+) | 972 | WP_239724182.1 | ROK family glucokinase | - |
| PYH60_RS06275 (PYH60_06275) | - | 1227073..1227387 (+) | 315 | WP_017000231.1 | MTH1187 family thiamine-binding protein | - |
| PYH60_RS06280 (PYH60_06280) | - | 1227417..1227656 (-) | 240 | WP_017000232.1 | DUF2759 domain-containing protein | - |
| PYH60_RS06285 (PYH60_06285) | - | 1227754..1228386 (+) | 633 | WP_017000233.1 | MBL fold metallo-hydrolase | - |
| PYH60_RS06290 (PYH60_06290) | - | 1228451..1228699 (-) | 249 | WP_017000234.1 | DUF2626 family protein | - |
| PYH60_RS06295 (PYH60_06295) | comGA | 1228852..1229748 (+) | 897 | WP_135031058.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PYH60_RS06300 (PYH60_06300) | comGB | 1229745..1230785 (+) | 1041 | WP_239724184.1 | competence type IV pilus assembly protein ComGB | - |
| PYH60_RS06305 (PYH60_06305) | comGC | 1230790..1231107 (+) | 318 | WP_070045385.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PYH60_RS06310 (PYH60_06310) | comGD | 1231107..1231535 (+) | 429 | WP_017000239.1 | competence type IV pilus minor pilin ComGD | - |
| PYH60_RS06315 (PYH60_06315) | comGE | 1231519..1231794 (+) | 276 | WP_017000240.1 | competence type IV pilus minor pilin ComGE | - |
| PYH60_RS06320 (PYH60_06320) | comGF | 1231808..1232203 (+) | 396 | WP_239724188.1 | competence type IV pilus minor pilin ComGF | - |
| PYH60_RS06325 (PYH60_06325) | - | 1232439..1232957 (+) | 519 | WP_064205405.1 | shikimate kinase | - |
| PYH60_RS06330 (PYH60_06330) | gcvT | 1233120..1234208 (+) | 1089 | WP_103269518.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 298 a.a. Molecular weight: 34453.62 Da Isoelectric Point: 5.8696
>NTDB_id=795353 PYH60_RS06295 WP_135031058.1 1228852..1229748(+) (comGA) [Mammaliicoccus lentus strain 7066]
METLFKTIIKDAIILKATDIHFIPVKEDRVKVQLRISGENTIYDCDINNALYNRLLIYMKFIAHLDVSERNKAQSGQYIF
DDIYKYYLRISTLPLSLGIESCSIRLTPKYFEEYIDHNIDDNYKMIKEEMFNSEGLFLFTGPTGSGKSTIMYQFLYDLQQ
IKDKHIITIEDPVEQVLDGVVQVSVNEKANINYHNSFKAILRCDPDVVMIGEIRDEETAKQVIQASLSGHLILSTMHAKD
NLGAIYRLLELGISKEQIKQGIACIANQRLLNDQLGNRYRQMTYIFSHEINLYLENKS
METLFKTIIKDAIILKATDIHFIPVKEDRVKVQLRISGENTIYDCDINNALYNRLLIYMKFIAHLDVSERNKAQSGQYIF
DDIYKYYLRISTLPLSLGIESCSIRLTPKYFEEYIDHNIDDNYKMIKEEMFNSEGLFLFTGPTGSGKSTIMYQFLYDLQQ
IKDKHIITIEDPVEQVLDGVVQVSVNEKANINYHNSFKAILRCDPDVVMIGEIRDEETAKQVIQASLSGHLILSTMHAKD
NLGAIYRLLELGISKEQIKQGIACIANQRLLNDQLGNRYRQMTYIFSHEINLYLENKS
Nucleotide
Download Length: 897 bp
>NTDB_id=795353 PYH60_RS06295 WP_135031058.1 1228852..1229748(+) (comGA) [Mammaliicoccus lentus strain 7066]
ATGGAAACTTTATTTAAGACAATTATCAAAGATGCTATTATTTTGAAAGCAACGGACATTCATTTTATTCCAGTGAAAGA
GGATCGAGTCAAAGTTCAGTTGAGGATAAGTGGTGAGAATACGATTTATGATTGTGATATTAATAACGCTTTATATAACC
GTTTATTAATTTATATGAAGTTTATTGCTCATCTAGATGTAAGTGAAAGGAATAAAGCTCAAAGTGGTCAATATATATTT
GATGATATATATAAATATTATTTAAGAATATCCACTTTACCTTTAAGTCTAGGAATTGAGTCTTGCTCAATTAGGTTAAC
GCCTAAATATTTCGAAGAATATATTGACCATAATATTGATGACAATTATAAAATGATTAAAGAAGAAATGTTTAATTCCG
AAGGCTTATTTTTGTTCACAGGACCAACCGGTTCGGGTAAATCGACGATTATGTACCAATTTTTATATGACTTACAACAA
ATTAAAGATAAACATATTATTACGATTGAAGACCCAGTTGAACAAGTTTTAGATGGTGTAGTACAAGTTTCTGTAAATGA
AAAAGCAAACATAAATTATCATAATTCTTTTAAAGCCATTTTAAGATGTGATCCAGATGTTGTCATGATAGGAGAAATTA
GAGATGAAGAAACAGCCAAGCAAGTTATACAAGCAAGTTTAAGTGGTCATTTAATATTATCTACAATGCATGCGAAAGAT
AATTTAGGGGCTATTTATAGACTTTTAGAACTTGGAATATCTAAAGAGCAAATAAAACAAGGTATCGCATGTATAGCCAA
TCAAAGACTTTTAAATGACCAATTAGGAAATAGATATAGACAAATGACTTATATATTTAGTCATGAAATTAATCTATATT
TAGAAAATAAATCATGA
ATGGAAACTTTATTTAAGACAATTATCAAAGATGCTATTATTTTGAAAGCAACGGACATTCATTTTATTCCAGTGAAAGA
GGATCGAGTCAAAGTTCAGTTGAGGATAAGTGGTGAGAATACGATTTATGATTGTGATATTAATAACGCTTTATATAACC
GTTTATTAATTTATATGAAGTTTATTGCTCATCTAGATGTAAGTGAAAGGAATAAAGCTCAAAGTGGTCAATATATATTT
GATGATATATATAAATATTATTTAAGAATATCCACTTTACCTTTAAGTCTAGGAATTGAGTCTTGCTCAATTAGGTTAAC
GCCTAAATATTTCGAAGAATATATTGACCATAATATTGATGACAATTATAAAATGATTAAAGAAGAAATGTTTAATTCCG
AAGGCTTATTTTTGTTCACAGGACCAACCGGTTCGGGTAAATCGACGATTATGTACCAATTTTTATATGACTTACAACAA
ATTAAAGATAAACATATTATTACGATTGAAGACCCAGTTGAACAAGTTTTAGATGGTGTAGTACAAGTTTCTGTAAATGA
AAAAGCAAACATAAATTATCATAATTCTTTTAAAGCCATTTTAAGATGTGATCCAGATGTTGTCATGATAGGAGAAATTA
GAGATGAAGAAACAGCCAAGCAAGTTATACAAGCAAGTTTAAGTGGTCATTTAATATTATCTACAATGCATGCGAAAGAT
AATTTAGGGGCTATTTATAGACTTTTAGAACTTGGAATATCTAAAGAGCAAATAAAACAAGGTATCGCATGTATAGCCAA
TCAAAGACTTTTAAATGACCAATTAGGAAATAGATATAGACAAATGACTTATATATTTAGTCATGAAATTAATCTATATT
TAGAAAATAAATCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
50.993 |
100 |
0.517 |
| comGA | Staphylococcus aureus N315 |
50.993 |
100 |
0.517 |