Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | PYH52_RS06200 | Genome accession | NZ_CP118794 |
| Coordinates | 1256566..1256883 (+) | Length | 105 a.a. |
| NCBI ID | WP_002465742.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain 7067 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1251566..1261883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH52_RS06170 (PYH52_06165) | - | 1252357..1252560 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| PYH52_RS06175 (PYH52_06170) | - | 1252557..1253543 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| PYH52_RS06180 (PYH52_06175) | - | 1253543..1253866 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| PYH52_RS06185 (PYH52_06180) | - | 1253870..1254493 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| PYH52_RS06190 (PYH52_06185) | comGA | 1254540..1255514 (+) | 975 | WP_353418744.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PYH52_RS06195 (PYH52_06190) | comGB | 1255486..1256553 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| PYH52_RS06200 (PYH52_06195) | comGC | 1256566..1256883 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PYH52_RS06205 (PYH52_06200) | comGD | 1256909..1257301 (+) | 393 | WP_255266366.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| PYH52_RS06210 (PYH52_06205) | - | 1257499..1257996 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| PYH52_RS06215 (PYH52_06210) | - | 1258155..1258673 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| PYH52_RS06220 (PYH52_06215) | gcvT | 1258845..1259936 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| PYH52_RS06225 (PYH52_06220) | gcvPA | 1259955..1261304 (+) | 1350 | WP_015364973.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11738.79 Da Isoelectric Point: 9.5430
>NTDB_id=795324 PYH52_RS06200 WP_002465742.1 1256566..1256883(+) (comGC) [Staphylococcus warneri strain 7067]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=795324 PYH52_RS06200 WP_002465742.1 1256566..1256883(+) (comGC) [Staphylococcus warneri strain 7067]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGCTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGCTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
81.188 |
96.19 |
0.781 |
| comGC | Staphylococcus aureus N315 |
81.188 |
96.19 |
0.781 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
43.434 |
94.286 |
0.41 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.553 |
89.524 |
0.381 |