Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   PYH52_RS06205 Genome accession   NZ_CP118794
Coordinates   1256909..1257301 (+) Length   130 a.a.
NCBI ID   WP_255266366.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 7067     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251909..1262301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH52_RS06170 (PYH52_06165) - 1252357..1252560 (+) 204 WP_002451885.1 YqgQ family protein -
  PYH52_RS06175 (PYH52_06170) - 1252557..1253543 (+) 987 WP_002465775.1 ROK family glucokinase -
  PYH52_RS06180 (PYH52_06175) - 1253543..1253866 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  PYH52_RS06185 (PYH52_06180) - 1253870..1254493 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  PYH52_RS06190 (PYH52_06185) comGA 1254540..1255514 (+) 975 WP_353418744.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH52_RS06195 (PYH52_06190) comGB 1255486..1256553 (+) 1068 WP_002465743.1 competence type IV pilus assembly protein ComGB -
  PYH52_RS06200 (PYH52_06195) comGC 1256566..1256883 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH52_RS06205 (PYH52_06200) comGD 1256909..1257301 (+) 393 WP_255266366.1 competence type IV pilus minor pilin ComGD Machinery gene
  PYH52_RS06210 (PYH52_06205) - 1257499..1257996 (+) 498 WP_002465737.1 competence type IV pilus minor pilin ComGF -
  PYH52_RS06215 (PYH52_06210) - 1258155..1258673 (+) 519 WP_037539765.1 shikimate kinase -
  PYH52_RS06220 (PYH52_06215) gcvT 1258845..1259936 (+) 1092 WP_002465750.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH52_RS06225 (PYH52_06220) gcvPA 1259955..1261304 (+) 1350 WP_015364973.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 15059.95 Da        Isoelectric Point: 10.5984

>NTDB_id=795325 PYH52_RS06205 WP_255266366.1 1256909..1257301(+) (comGD) [Staphylococcus warneri strain 7067]
MVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHINVKEEHGKKYQIKIKDG
KIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 393 bp        

>NTDB_id=795325 PYH52_RS06205 WP_255266366.1 1256909..1257301(+) (comGD) [Staphylococcus warneri strain 7067]
ATGGTATTATTCATTTTGTCTATACTATTGTTGTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGA
TGAAATGAATATTAATCTACTAATAACTCAATTGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTT
TAATGTTTAATCATCAATCTTCTCATATAAATGTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGG
AAGATCATAAAGATAACGAAAATAAATCTAATTACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATAT
AAAAATGAAACATTCAATATACAAAGTCATATTTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

49.231

100

0.492
  comGD Staphylococcus aureus N315

49.231

100

0.492