Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   Q8X46_RS09635 Genome accession   NZ_CP132063
Coordinates   1979341..1979997 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain QML220601     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1974341..1984997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X46_RS09605 (Q8X46_09605) dcyD 1975221..1976207 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  Q8X46_RS09610 (Q8X46_09610) tcyL 1976222..1976890 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  Q8X46_RS09615 (Q8X46_09615) tcyN 1976887..1977639 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  Q8X46_RS09620 (Q8X46_09620) sdiA 1977869..1978591 (+) 723 WP_001154279.1 transcriptional regulator SdiA -
  Q8X46_RS09625 (Q8X46_09625) yecF 1978658..1978882 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  Q8X46_RS09630 (Q8X46_09630) yecU 1978869..1979045 (-) 177 WP_000590347.1 protein YecU -
  Q8X46_RS24670 - 1979128..1979199 (-) 72 Protein_1888 transcriptional regulator -
  Q8X46_RS09635 (Q8X46_09635) letA 1979341..1979997 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  Q8X46_RS09640 (Q8X46_09640) uvrC 1979994..1981826 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  Q8X46_RS09645 (Q8X46_09645) pgsA 1981883..1982431 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q8X46_RS09665 (Q8X46_09665) yecA 1983081..1983746 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=795325 Q8X46_RS09635 WP_000611335.1 1979341..1979997(+) (letA) [Escherichia coli strain QML220601]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=795325 Q8X46_RS09635 WP_000611335.1 1979341..1979997(+) (letA) [Escherichia coli strain QML220601]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486