Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ORD17_RS09430 Genome accession   NZ_CP118747
Coordinates   1816579..1818090 (-) Length   503 a.a.
NCBI ID   WP_308388188.1    Uniprot ID   -
Organism   Acidithiobacillus sp. AMEEHan     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1811579..1823090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORD17_RS09405 ilvN 1812883..1813371 (+) 489 WP_308388178.1 acetolactate synthase small subunit -
  ORD17_RS09410 ilvC 1813397..1814413 (+) 1017 WP_308388180.1 ketol-acid reductoisomerase -
  ORD17_RS09415 - 1814512..1815174 (+) 663 WP_308388182.1 phosphatidylserine decarboxylase -
  ORD17_RS09420 pssA 1815171..1815914 (+) 744 WP_308388184.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ORD17_RS09425 - 1815911..1816564 (-) 654 WP_308388186.1 DUF202 domain-containing protein -
  ORD17_RS09430 comM 1816579..1818090 (-) 1512 WP_308388188.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ORD17_RS09435 - 1818097..1818345 (-) 249 WP_308388190.1 accessory factor UbiK family protein -
  ORD17_RS09440 - 1818356..1819537 (-) 1182 WP_308388191.1 FAD-dependent monooxygenase -
  ORD17_RS09445 - 1819527..1820771 (-) 1245 WP_308388193.1 FAD-dependent monooxygenase -
  ORD17_RS09450 - 1820904..1821266 (-) 363 WP_308388195.1 DsrE family protein -
  ORD17_RS09455 - 1821397..1821999 (+) 603 WP_308388197.1 peroxiredoxin -
  ORD17_RS09460 - 1822048..1822704 (+) 657 WP_308388199.1 DUF202 domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54291.25 Da        Isoelectric Point: 7.7131

>NTDB_id=794966 ORD17_RS09430 WP_308388188.1 1816579..1818090(-) (comM) [Acidithiobacillus sp. AMEEHan]
MALALVRSRAPMGIQAAEVLVECDLGPGLPTFAIVGLPEAAVRESRDRVRAAIQNSGLEFPARRIIVNLAPADLPKEGGR
FDLPIALGILRASGQLPQSALDGLECIGELALDGSLRKVPGILACALAAQAAGHSLALPWESTGEARLAANCRLLPAQSL
AQLVAILRGEEAIPDLPLHVAASDLPIDDGDLADVRGQEQAKRALIIAATGGHHLLFSGPPGTGKSMLAARLPGLLSPLR
DEEALEVASIHSLHGLFDPATWRRRPYRSPHHSVSAAALVGGGSQPRPGEISLAHRGVLFLDELPEFSRSVLEVLREPLE
TGEIHIARARQRARFPARFQLVAAMNPCPCGHLGNPLQACRCSPAQIQQYRSRLSGPLLDRIDLQVEVPVLAPEYLEQAS
RGDSSALWREHISRAVEQQWQRQGCSNAQLQGNALNQHCALDADTRGFLRLAAERLHFSARAYHRVLRVARSIADLAAET
SIRREHLAEALQYRRLAHTLTHP

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=794966 ORD17_RS09430 WP_308388188.1 1816579..1818090(-) (comM) [Acidithiobacillus sp. AMEEHan]
ATGGCTTTGGCACTGGTGCGCAGCCGCGCGCCCATGGGTATTCAGGCCGCAGAGGTCTTGGTCGAGTGCGACTTGGGGCC
GGGCTTGCCCACTTTCGCCATCGTTGGTTTGCCGGAAGCGGCAGTGCGAGAATCCCGCGATCGGGTGCGCGCCGCCATTC
AGAACAGCGGTCTGGAATTCCCTGCACGGCGCATCATTGTCAATCTCGCGCCAGCCGACCTCCCCAAGGAGGGGGGGCGA
TTCGACTTGCCCATCGCTCTCGGCATTCTCCGTGCGAGTGGACAGTTGCCGCAGTCTGCTCTGGACGGTCTCGAATGTAT
TGGCGAGCTGGCATTGGACGGTAGCCTGCGCAAGGTTCCGGGCATCCTTGCCTGCGCACTCGCTGCCCAAGCGGCGGGCC
ACAGTCTTGCCCTCCCCTGGGAAAGCACGGGCGAGGCACGATTGGCCGCCAACTGCCGACTTCTGCCAGCACAGAGTTTA
GCACAGCTAGTGGCGATTTTACGCGGTGAGGAAGCGATTCCCGACTTGCCGCTGCACGTGGCCGCGTCTGATCTGCCGAT
CGATGACGGAGATCTCGCCGACGTTCGTGGTCAGGAGCAGGCCAAACGTGCGCTGATCATTGCCGCCACGGGCGGGCACC
ATCTGTTGTTTTCCGGTCCGCCGGGTACCGGCAAGAGCATGCTGGCTGCCCGTCTACCCGGCCTGCTTTCCCCTTTGCGC
GACGAGGAAGCACTGGAAGTCGCGTCCATCCACAGTTTGCATGGGCTATTCGACCCGGCCACCTGGCGACGCCGCCCCTA
TCGCAGCCCGCACCATAGCGTGTCTGCCGCAGCCCTCGTGGGCGGCGGTTCGCAACCGCGTCCCGGGGAGATCAGCCTCG
CCCATCGTGGCGTTCTGTTTCTCGACGAATTGCCGGAGTTTTCCCGCTCCGTTCTGGAAGTCTTGCGTGAACCTTTGGAA
ACGGGGGAAATCCACATCGCCCGTGCGCGCCAGCGCGCACGTTTTCCCGCCCGTTTTCAGTTGGTTGCGGCAATGAATCC
CTGTCCCTGCGGGCATCTGGGCAATCCATTGCAGGCCTGCCGCTGCAGCCCTGCACAAATCCAGCAATATCGCAGCCGCC
TGTCGGGACCACTTCTGGACCGTATTGATCTTCAGGTGGAAGTACCGGTGCTCGCGCCAGAATATCTGGAACAGGCATCT
CGCGGGGATAGCAGCGCGCTGTGGCGGGAACACATCAGTCGGGCAGTCGAGCAGCAATGGCAACGCCAAGGTTGTAGCAA
CGCGCAGCTACAGGGCAATGCCCTGAACCAGCACTGCGCCTTGGATGCGGATACCCGTGGCTTTCTGCGTCTGGCGGCAG
AACGCCTGCACTTCTCTGCGCGGGCTTATCATCGTGTCCTGCGGGTCGCCCGCAGCATTGCCGATCTTGCGGCGGAAACT
TCCATACGTCGGGAGCATTTGGCTGAGGCGCTGCAGTATCGACGCCTCGCCCATACCCTGACCCATCCATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.579

100

0.527
  comM Vibrio campbellii strain DS40M4

51.874

100

0.523
  comM Haemophilus influenzae Rd KW20

51.485

100

0.517
  comM Glaesserella parasuis strain SC1401

50

100

0.503
  comM Legionella pneumophila str. Paris

47.714

100

0.477
  comM Legionella pneumophila strain ERS1305867

47.714

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

100

0.427