Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORD17_RS06945 Genome accession   NZ_CP118747
Coordinates   1358647..1359099 (+) Length   150 a.a.
NCBI ID   WP_308387587.1    Uniprot ID   -
Organism   Acidithiobacillus sp. AMEEHan     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1359174..1360226 1358647..1359099 flank 75


Gene organization within MGE regions


Location: 1358647..1360226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORD17_RS06945 ssb 1358647..1359099 (+) 453 WP_308387587.1 single-stranded DNA-binding protein Machinery gene
  ORD17_RS06950 - 1359174..1360226 (+) 1053 WP_308387588.1 IS5 family transposase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16628.45 Da        Isoelectric Point: 5.3175

>NTDB_id=794964 ORD17_RS06945 WP_308387587.1 1358647..1359099(+) (ssb) [Acidithiobacillus sp. AMEEHan]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANLNLATSETFKDREGNRQERTEWHRVVLFGRTAEIAGEYLKKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGGRGGGTANFDDGQQDGYAAPQSPAKGSVRPPVEQFEDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=794964 ORD17_RS06945 WP_308387587.1 1358647..1359099(+) (ssb) [Acidithiobacillus sp. AMEEHan]
ATGGCGGGAGTGAATAAAGTCATACTACTCGGGCACTTGGGGCGTGACCCCGAGATGCGTTATCAGCCCAGCGGCGGGGC
CATTGCCAACCTCAATCTGGCCACGTCCGAAACCTTCAAGGATCGCGAGGGCAATCGCCAGGAGCGCACGGAATGGCACC
GCGTGGTGCTGTTTGGGCGTACCGCGGAGATCGCTGGTGAATATCTGAAAAAAGGCAGTATGGCGTACGTCGAGGGACGC
CTGCAGACGCGCAAATGGACCGACAAGGAAGGCCAGGAGCGGTATACCACGGAGATCGTTGGTGATCGCCTGCAGCTCGT
GGGGGGTCGCGGGGGTGGCACCGCGAATTTCGACGATGGTCAGCAGGACGGCTATGCCGCTCCGCAAAGCCCGGCCAAAG
GCTCGGTGCGTCCGCCGGTGGAGCAGTTTGAGGATGACGACATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.714

100

0.58
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.573
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.52
  ssb Neisseria meningitidis MC58

44.509

100

0.513
  ssb Latilactobacillus sakei subsp. sakei 23K

32.164

100

0.367