Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PW252_RS02485 Genome accession   NZ_CP118735
Coordinates   478725..479390 (+) Length   221 a.a.
NCBI ID   WP_248049339.1    Uniprot ID   A0AA96VP23
Organism   Streptococcus iners strain 29887     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473725..484390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS02450 (PW252_02450) - 474392..474607 (+) 216 WP_105144558.1 hypothetical protein -
  PW252_RS02455 (PW252_02455) - 474610..474960 (+) 351 WP_248049330.1 hypothetical protein -
  PW252_RS02460 (PW252_02460) - 474964..475389 (+) 426 WP_248049331.1 hypothetical protein -
  PW252_RS02465 (PW252_02465) - 475391..475630 (+) 240 WP_248049333.1 phage holin -
  PW252_RS02470 (PW252_02470) - 475736..476452 (+) 717 Protein_449 SH3 domain-containing protein -
  PW252_RS02475 (PW252_02475) - 476751..477383 (-) 633 WP_248049335.1 YigZ family protein -
  PW252_RS02480 (PW252_02480) comFA/cflA 477440..478732 (+) 1293 WP_248049337.1 DEAD/DEAH box helicase Machinery gene
  PW252_RS02485 (PW252_02485) comFC/cflB 478725..479390 (+) 666 WP_248049339.1 ComF family protein Machinery gene
  PW252_RS02490 (PW252_02490) hpf 479467..480009 (+) 543 WP_105117239.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25411.89 Da        Isoelectric Point: 6.6831

>NTDB_id=794730 PW252_RS02485 WP_248049339.1 478725..479390(+) (comFC/cflB) [Streptococcus iners strain 29887]
MSNCLLCDQTMKTRQTFSELIFFGKSQSGVCNDCMATFEEIAEQHCSHCAKSGEEETCKDCRYWLSQGKSVSHTAIFQYN
EAMADYFSRYKFQGDYILRKIFAEQVQKALEPYSDYTIVPIPLSQERLEERGFNQVTGILDAARVPYKELLGKRASQKQS
SKSREERLGTEQTFYLVDEKSLPEKILLVDDIYTTGATIQLATRLFMKTSQKEIKTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=794730 PW252_RS02485 WP_248049339.1 478725..479390(+) (comFC/cflB) [Streptococcus iners strain 29887]
ATGTCTAACTGCTTACTCTGTGATCAAACCATGAAAACCAGACAAACCTTTTCTGAGCTTATTTTCTTTGGTAAGTCCCA
GTCAGGAGTTTGTAATGACTGTATGGCTACTTTTGAAGAAATAGCAGAGCAACACTGTTCGCATTGTGCTAAAAGTGGAG
AAGAAGAGACCTGCAAAGACTGTCGTTACTGGTTAAGCCAAGGGAAATCAGTGTCTCACACAGCTATTTTTCAGTACAAT
GAAGCCATGGCAGATTACTTTAGTCGCTACAAATTTCAAGGCGATTACATCCTCAGGAAAATCTTTGCAGAACAAGTCCA
AAAAGCTCTAGAACCTTATTCCGACTATACAATCGTTCCCATTCCGCTCAGTCAAGAACGACTAGAAGAACGGGGATTTA
ATCAAGTGACAGGAATATTGGATGCGGCTAGGGTCCCCTATAAAGAATTGTTAGGCAAACGAGCTAGCCAAAAGCAATCC
TCAAAAAGTCGAGAAGAGAGGCTAGGAACAGAACAAACATTTTATCTGGTGGATGAAAAAAGTCTCCCAGAAAAAATTTT
ATTAGTTGACGATATTTACACAACAGGGGCTACAATCCAGCTTGCTACAAGGCTTTTCATGAAAACAAGTCAGAAAGAAA
TCAAAACATTTTCACTCGCACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae Rx1

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae D39

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae R6

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae TIGR4

50.917

98.643

0.502
  comFC/cflB Streptococcus mitis NCTC 12261

50.917

98.643

0.502