Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | PW252_RS00720 | Genome accession | NZ_CP118735 |
| Coordinates | 112927..113880 (+) | Length | 317 a.a. |
| NCBI ID | WP_248049593.1 | Uniprot ID | - |
| Organism | Streptococcus iners strain 29887 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 107927..118880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PW252_RS00680 (PW252_00680) | - | 108086..109036 (-) | 951 | WP_248049579.1 | S66 peptidase family protein | - |
| PW252_RS00685 (PW252_00685) | comYA | 109121..110071 (+) | 951 | WP_248049581.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PW252_RS00690 (PW252_00690) | comYB | 109983..111020 (+) | 1038 | WP_248049583.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| PW252_RS00695 (PW252_00695) | comYC | 111022..111303 (+) | 282 | WP_248049584.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PW252_RS00700 (PW252_00700) | comGD | 111284..111691 (+) | 408 | WP_248049586.1 | competence type IV pilus minor pilin ComGD | - |
| PW252_RS00705 (PW252_00705) | comYE | 111663..111956 (+) | 294 | WP_248049588.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| PW252_RS00710 (PW252_00710) | comGF/cglF | 111943..112377 (+) | 435 | WP_248049590.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| PW252_RS00715 (PW252_00715) | comGG | 112355..112873 (+) | 519 | WP_248049592.1 | competence type IV pilus minor pilin ComGG | - |
| PW252_RS00720 (PW252_00720) | comYH | 112927..113880 (+) | 954 | WP_248049593.1 | class I SAM-dependent methyltransferase | Machinery gene |
| PW252_RS00725 (PW252_00725) | - | 113930..115117 (+) | 1188 | WP_105125239.1 | acetate kinase | - |
| PW252_RS00730 (PW252_00730) | - | 115375..115926 (+) | 552 | WP_105125238.1 | folate family ECF transporter S component | - |
| PW252_RS00735 (PW252_00735) | - | 115980..117236 (+) | 1257 | WP_248049594.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| PW252_RS00740 (PW252_00740) | pepA | 117281..118342 (-) | 1062 | WP_248049595.1 | glutamyl aminopeptidase | - |
| PW252_RS00745 (PW252_00745) | - | 118489..118773 (+) | 285 | WP_044753388.1 | DUF4651 domain-containing protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35741.88 Da Isoelectric Point: 4.4987
>NTDB_id=794721 PW252_RS00720 WP_248049593.1 112927..113880(+) (comYH) [Streptococcus iners strain 29887]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQTLHNLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVTTQQVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGFYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAIMLAPNDLLSSPQ
SDLLKGWLQAEANIVAMIALPPSLFGKAAMAKSIFVLQKKTARPLVPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQTLHNLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVTTQQVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGFYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAIMLAPNDLLSSPQ
SDLLKGWLQAEANIVAMIALPPSLFGKAAMAKSIFVLQKKTARPLVPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=794721 PW252_RS00720 WP_248049593.1 112927..113880(+) (comYH) [Streptococcus iners strain 29887]
ATGAATTTTGAGAAGATTGAACAGGCCTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGCACCAA
TATTTATGATGCCATGATTGAGCAAAACGCAGCCTATCTAGCTGGTCAGCACGACACGGATTTGATTGTCCGCAATAATC
AAACCTTACACAACTTGCACTTGACCAAGGAAGAATGGCGTCGTGCCTTTCAATTCCTACTGATCAAGGCCAATCAGACA
GAGCCTATGCAGTACAATCACCAGTTTACGCCAGACTCTATCGGCTTTATTCTATCCTTCCTAGTGGACCAGTTGGTGAC
GACTCAGCAGGTTACCGTCTTGGAAATTGGTTCCGGAACGGGTAACTTGGCGCAGACCATCCTAAATGCCAGCCAGAAAG
ACTTGGATTACTTGGGGATTGAAGTGGATGATCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTTATGCAGGCAGAG
ATTTCCTTTGCCCAGGGTGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTTTTATCCAGATGACCAGATTGCCAGTCGTTATCAGGTGGCTAGCCAGACGGAGCATACCTACGCTCATCATTTGCTCA
TGGAACAGTCCCTCAAGTATCTTGAAAAAGATGGGTTTGCGATTATGCTGGCTCCAAATGATCTTTTAAGCAGTCCACAG
AGCGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATATCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGCAA
AGCAGCCATGGCCAAGTCAATTTTTGTATTGCAGAAGAAGACTGCTAGACCGCTAGTACCATTTGTCTATCCTTTGCAGA
GTTTGCAAGAACCTGAAGCTATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG
ATGAATTTTGAGAAGATTGAACAGGCCTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGCACCAA
TATTTATGATGCCATGATTGAGCAAAACGCAGCCTATCTAGCTGGTCAGCACGACACGGATTTGATTGTCCGCAATAATC
AAACCTTACACAACTTGCACTTGACCAAGGAAGAATGGCGTCGTGCCTTTCAATTCCTACTGATCAAGGCCAATCAGACA
GAGCCTATGCAGTACAATCACCAGTTTACGCCAGACTCTATCGGCTTTATTCTATCCTTCCTAGTGGACCAGTTGGTGAC
GACTCAGCAGGTTACCGTCTTGGAAATTGGTTCCGGAACGGGTAACTTGGCGCAGACCATCCTAAATGCCAGCCAGAAAG
ACTTGGATTACTTGGGGATTGAAGTGGATGATCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTTATGCAGGCAGAG
ATTTCCTTTGCCCAGGGTGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTTTTATCCAGATGACCAGATTGCCAGTCGTTATCAGGTGGCTAGCCAGACGGAGCATACCTACGCTCATCATTTGCTCA
TGGAACAGTCCCTCAAGTATCTTGAAAAAGATGGGTTTGCGATTATGCTGGCTCCAAATGATCTTTTAAGCAGTCCACAG
AGCGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATATCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGCAA
AGCAGCCATGGCCAAGTCAATTTTTGTATTGCAGAAGAAGACTGCTAGACCGCTAGTACCATTTGTCTATCCTTTGCAGA
GTTTGCAAGAACCTGAAGCTATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |