Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PW220_RS06425 Genome accession   NZ_CP118734
Coordinates   1278060..1279004 (-) Length   314 a.a.
NCBI ID   WP_248055092.1    Uniprot ID   A0AA96VHN2
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273060..1284004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS06400 (PW220_06405) - 1273701..1274420 (-) 720 WP_248055097.1 O-methyltransferase -
  PW220_RS06405 (PW220_06410) - 1274496..1275044 (-) 549 WP_248055096.1 DUF6630 family protein -
  PW220_RS06410 (PW220_06415) - 1275070..1275513 (-) 444 WP_248055095.1 hypothetical protein -
  PW220_RS06415 (PW220_06420) pepF 1275515..1277317 (-) 1803 WP_248055094.1 oligoendopeptidase F Regulator
  PW220_RS06420 (PW220_06425) - 1277390..1278019 (-) 630 WP_316716102.1 hypothetical protein -
  PW220_RS06425 (PW220_06430) coiA 1278060..1279004 (-) 945 WP_248055092.1 competence protein CoiA Machinery gene
  PW220_RS06430 (PW220_06435) - 1279154..1282108 (+) 2955 WP_248055091.1 AAA family ATPase -
  PW220_RS06435 (PW220_06440) hutG 1282195..1283190 (-) 996 WP_248055090.1 formimidoylglutamase -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 37152.04 Da        Isoelectric Point: 8.5246

>NTDB_id=794697 PW220_RS06425 WP_248055092.1 1278060..1279004(-) (coiA) [Streptococcus iners subsp. hyiners strain 29892]
MFIVKNKTNHLFNLLELQDLRDEDFYCPQCSSPVRYRSGKILRPHFAHVSRKECPFFTENESAQHLSLKSELYSWLVEKE
PVELEKYLPEINQLADLLVNNSLALEVQCSSLPISRLQERTQAYCNAGYQVLWLLGKDLWLKDRLTKLHKQFLSFSMNMG
FHLWELDDEKKELRLRYLIHEDLRGKIHCLTKVFPFGQGKLLDILRLPFAKQTLSSMTCPMDEDLPRYIAQQLYYKSPKW
LALQAEAYGRGENLLTKTALDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDQFYDKVENQRKQVLYPPIIYRRYV

Nucleotide


Download         Length: 945 bp        

>NTDB_id=794697 PW220_RS06425 WP_248055092.1 1278060..1279004(-) (coiA) [Streptococcus iners subsp. hyiners strain 29892]
ATGTTTATCGTAAAAAATAAAACCAATCACTTGTTCAATCTCCTAGAACTTCAGGATTTGAGAGATGAAGACTTTTATTG
TCCCCAGTGTTCTAGTCCAGTCCGCTACCGTTCTGGTAAAATCCTGCGACCACACTTTGCCCATGTTAGTCGTAAAGAGT
GCCCATTTTTTACGGAGAATGAATCTGCCCAGCACCTCTCCCTCAAATCAGAGCTTTACAGCTGGCTGGTGGAAAAGGAG
CCGGTTGAGTTGGAAAAATACCTACCAGAGATTAACCAACTAGCAGATTTATTGGTCAATAATAGTCTAGCCTTAGAAGT
CCAATGTTCCAGTCTGCCGATTTCTCGTTTGCAGGAACGGACGCAAGCCTATTGTAATGCTGGTTACCAGGTTCTCTGGT
TGTTAGGCAAGGATTTGTGGCTCAAGGATAGGTTGACCAAATTGCATAAGCAGTTTCTCTCCTTTAGTATGAATATGGGT
TTTCATCTCTGGGAATTGGATGACGAGAAGAAGGAGTTACGACTTCGCTACCTCATTCATGAAGACCTGCGTGGCAAGAT
CCACTGTCTAACGAAAGTCTTTCCTTTTGGTCAGGGAAAATTACTGGATATATTACGATTACCATTTGCCAAGCAAACCC
TATCTAGCATGACTTGCCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCTAAATGG
CTTGCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGCATTAGACTTCTATCCCCAAATCCG
CCTGCCCCGCTCTGCCATTGGCTTTGCCCAGATCAAGCAAGACCTGACACCGATTTACCAGGCATTTGACCAGTTTTACG
ACAAAGTGGAAAATCAGAGAAAACAAGTCTTGTATCCACCTATAATTTATAGACGATATGTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.592

100

0.516
  coiA Streptococcus pneumoniae TIGR4

51.274

100

0.513
  coiA Streptococcus pneumoniae Rx1

51.274

100

0.513
  coiA Streptococcus pneumoniae D39

51.274

100

0.513
  coiA Streptococcus pneumoniae R6

51.274

100

0.513
  coiA Lactococcus lactis subsp. cremoris KW2

45.426

100

0.459