Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PW220_RS06415 Genome accession   NZ_CP118734
Coordinates   1275515..1277317 (-) Length   600 a.a.
NCBI ID   WP_248055094.1    Uniprot ID   A0AA97ABE4
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270515..1282317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS06390 (PW220_06395) - 1271944..1272429 (-) 486 WP_248055098.1 LURP-one-related/scramblase family protein -
  PW220_RS06395 (PW220_06400) prsA 1272631..1273638 (-) 1008 WP_105118027.1 peptidylprolyl isomerase PrsA -
  PW220_RS06400 (PW220_06405) - 1273701..1274420 (-) 720 WP_248055097.1 O-methyltransferase -
  PW220_RS06405 (PW220_06410) - 1274496..1275044 (-) 549 WP_248055096.1 DUF6630 family protein -
  PW220_RS06410 (PW220_06415) - 1275070..1275513 (-) 444 WP_248055095.1 hypothetical protein -
  PW220_RS06415 (PW220_06420) pepF 1275515..1277317 (-) 1803 WP_248055094.1 oligoendopeptidase F Regulator
  PW220_RS06420 (PW220_06425) - 1277390..1278019 (-) 630 WP_316716102.1 hypothetical protein -
  PW220_RS06425 (PW220_06430) coiA 1278060..1279004 (-) 945 WP_248055092.1 competence protein CoiA Machinery gene
  PW220_RS06430 (PW220_06435) - 1279154..1282108 (+) 2955 WP_248055091.1 AAA family ATPase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69098.21 Da        Isoelectric Point: 4.5357

>NTDB_id=794696 PW220_RS06415 WP_248055094.1 1275515..1277317(-) (pepF) [Streptococcus iners subsp. hyiners strain 29892]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELEAIQVETDKAKVFAGHLLDSAKSLLEISETQLGLMRRLEKLYVYASMKND
QDTREGKYQEFQAKALSIYSVFSQTFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLSAKDHILSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESQNREVRQEAYEALYETYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSSTDTKVTYEEALA
TCADTLNIFGDEYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQN
QPYVYGHYSIFLAEIASTTNENLLTEKLLAEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNQLYGELNEKYYGLSAEENPHIQYEWARIPHFYYNFYVYQYATGFAAASALADKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=794696 PW220_RS06415 WP_248055094.1 1275515..1277317(-) (pepF) [Streptococcus iners subsp. hyiners strain 29892]
ATGTCTAAACAACGTTATGAAATCGAAGAAAAATACCAGTGGGATTTGACCACAATTTTCCCAACAGATGAGGCTTGGGA
AGCTGAGTTGGAGGCTATCCAGGTAGAAACAGACAAGGCCAAGGTTTTTGCAGGTCACTTGCTGGATTCTGCTAAGAGTC
TCTTGGAGATTAGCGAAACCCAGCTTGGCCTTATGCGTCGACTTGAAAAACTCTATGTCTATGCGTCCATGAAAAATGAC
CAAGACACTCGTGAAGGGAAGTACCAGGAATTTCAAGCTAAAGCTCTGAGCATTTACTCAGTTTTTTCTCAGACTTTTGC
TTTCTATGAGCCAGAATTTATGGCCATTACCGAAGAGCAGTTGGAAGCCTTTAAGGCAGAAGAGCCAGCCCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTCTTGTCAGCCAAGGACCACATCTTGTCACAAGAAGTGGAAGAAGTCCTTGCAGCGACC
AGCGAGATTTTTGAAGCACCATCTGAAACCTTCTCGGTATTGGATAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTACCACTTTCTCACGGCAACTACATCCACTTTATGGAATCCCAGAACCGTGAGGTGCGTCAAGAAG
CCTACGAGGCTCTCTACGAAACCTACGAGCAATTCCAGCACACTTACGCCAAGACCCTTCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTACGCAAGTACGACTCTGCCCGCCACGCAGCCCTTTCAGCCAACTTCATCCCGGAGTCCGTATA
CGATACATTAGTGTCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGCTACATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACCTTAAGATGTACGATATGTACACACCACTTTCTAGCACAGACACAAAGGTTACTTATGAGGAAGCCTTGGCG
ACCTGTGCGGATACCTTGAATATCTTTGGTGATGAGTACGCGGCTATTGTCAAAGAAGCCTTTGAAAACCGCTGGATTGA
TGTTCATGTAAACGAAGGAAAGCGTTCAGGAGCCTATTCAGGTGGTGCCTATGACACCAACGCCTTTATGCTCCTCAACT
GGCAGGACAATTTGGACAATATGTACACCCTCATTCACGAAACAGGGCATTCGCTTCATTCTATGTTGACTCGTCAGAAC
CAGCCTTATGTCTATGGTCACTATTCGATTTTCTTGGCTGAGATTGCATCGACTACCAACGAAAATCTCCTGACAGAGAA
GCTCTTGGCAGAAGTAGAAGACGACAAGACCCGTTTTGCTATTCTCAACCACTACCTAGACGGCTTCCGTGGAACGGTCT
TCCGTCAAACCCAGTTTGCAGAGTTTGAGCAGGCTATTTACAAAGCAGACCAAGAAGGTCAGGTCTTGACAGCAGACTTC
CTCAACCAGCTCTACGGGGAGCTTAATGAGAAGTATTACGGCTTGTCTGCGGAAGAAAATCCACACATTCAGTACGAATG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATATGCAACTGGCTTTGCGGCAGCGTCTGCTTTGGCAG
ACAAGATTGTCAATGGTAGCCCAGAGGACAAGGAAAACTACCTCAACTACCTCAAGGCTGGTAGCTCTGATTATCCACTC
AATGTCATCGCAAAAGCTGGTGTGGATATGACCAAGGAAGACTATCTCAACGATGCCTTCAAGGTCTTTGAAGCCCGCTT
GACAGAGTTGGAAGCTCTTGTTGAGAAAGGAGTGCATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.167

100

0.692