Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PW220_RS02275 Genome accession   NZ_CP118734
Coordinates   429468..430133 (+) Length   221 a.a.
NCBI ID   WP_248055880.1    Uniprot ID   A0AA96VJG3
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424468..435133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS02245 (PW220_02245) - 424910..425335 (+) 426 WP_248055884.1 hypothetical protein -
  PW220_RS02250 (PW220_02250) - 425344..425664 (+) 321 WP_248044537.1 hypothetical protein -
  PW220_RS02255 (PW220_02255) - 425674..426336 (+) 663 WP_248055883.1 hypothetical protein -
  PW220_RS02260 (PW220_02260) - 426654..427157 (+) 504 WP_248055882.1 PBECR4 domain-containing protein -
  PW220_RS02265 (PW220_02265) - 427494..428126 (-) 633 WP_172082949.1 YigZ family protein -
  PW220_RS02270 (PW220_02270) comFA/cflA 428183..429475 (+) 1293 WP_248055881.1 DEAD/DEAH box helicase Machinery gene
  PW220_RS02275 (PW220_02275) comFC/cflB 429468..430133 (+) 666 WP_248055880.1 ComF family protein Machinery gene
  PW220_RS02280 (PW220_02280) hpf 430210..430752 (+) 543 WP_105117239.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25586.22 Da        Isoelectric Point: 7.1101

>NTDB_id=794681 PW220_RS02275 WP_248055880.1 429468..430133(+) (comFC/cflB) [Streptococcus iners subsp. hyiners strain 29892]
MSNCLLCNQTMKTRQTFSELIFFGKSQPGVCNDCMATFEEIAEQHCSHCSKSGDEEICKDCRYWLSQGKSVSHTAIFQYN
EAMADYFSRYKFQGDYILRKIFTEQVQKVLEPYSEYTIVPIPLSQERLEERGFNQVTGILDAARIPYKELLGKRDVKKQS
SKNREERIGTEQPFYLVDEKSLPDKILLVDDIYTTGATIQLATRLFMKTSQKEIKTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=794681 PW220_RS02275 WP_248055880.1 429468..430133(+) (comFC/cflB) [Streptococcus iners subsp. hyiners strain 29892]
ATGTCTAACTGCTTACTCTGTAATCAAACCATGAAAACCAGACAAACATTTTCTGAGCTTATTTTCTTTGGTAAGTCCCA
GCCAGGAGTTTGTAATGACTGTATGGCTACTTTTGAAGAAATAGCAGAGCAACACTGTTCGCATTGTTCTAAAAGTGGAG
ATGAAGAGATCTGCAAGGATTGTCGCTACTGGTTAAGCCAAGGGAAATCAGTGTCTCACACAGCTATTTTTCAGTATAAT
GAAGCAATGGCTGATTACTTTAGTCGCTACAAATTTCAAGGTGATTACATTCTCAGGAAAATCTTTACAGAACAAGTCCA
AAAAGTTCTAGAACCGTATTCCGAATATACAATCGTTCCCATTCCACTCAGTCAAGAACGTCTAGAAGAACGGGGATTTA
ATCAAGTGACTGGTATATTGGATGCGGCTAGGATTCCCTATAAAGAATTATTGGGCAAACGAGATGTCAAAAAACAATCA
TCAAAAAATCGAGAAGAGAGGATAGGAACAGAACAACCCTTTTATCTGGTGGATGAAAAAAGTCTACCAGATAAAATTCT
ATTAGTCGATGATATTTACACAACAGGGGCTACAATCCAGCTTGCCACAAGGCTTTTCATGAAAACAAGTCAGAAAGAAA
TCAAAACATTTTCACTCGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae Rx1

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae D39

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae R6

50.917

98.643

0.502
  comFC/cflB Streptococcus pneumoniae TIGR4

50.917

98.643

0.502
  comFC/cflB Streptococcus mitis NCTC 12261

50

98.643

0.493