Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PXH68_RS02110 Genome accession   NZ_CP118733
Coordinates   445891..446553 (+) Length   220 a.a.
NCBI ID   WP_316716073.1    Uniprot ID   -
Organism   Streptococcus suivaginalis strain 29896     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440891..451553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS02085 (PXH68_02085) - 441123..442523 (+) 1401 WP_248027112.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  PXH68_RS02090 (PXH68_02090) - 442525..442890 (+) 366 WP_158455586.1 S1 RNA-binding domain-containing protein -
  PXH68_RS02095 (PXH68_02095) cysK 442901..443827 (-) 927 WP_248027110.1 cysteine synthase A -
  PXH68_RS02100 (PXH68_02100) - 443916..444548 (-) 633 WP_248027108.1 YigZ family protein -
  PXH68_RS02105 (PXH68_02105) comFA/cflA 444585..445910 (+) 1326 WP_398582967.1 DEAD/DEAH box helicase Machinery gene
  PXH68_RS02110 (PXH68_02110) comFC/cflB 445891..446553 (+) 663 WP_316716073.1 ComF family protein Machinery gene
  PXH68_RS02115 (PXH68_02115) hpf 446628..447167 (+) 540 WP_158455578.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25437.28 Da        Isoelectric Point: 8.3852

>NTDB_id=794622 PXH68_RS02110 WP_316716073.1 445891..446553(+) (comFC/cflB) [Streptococcus suivaginalis strain 29896]
MNCLLCDQPISTKESFSNIFSFSKSQARTCQVCKAQFEKIGQKHCPSCYKYDEDKECEDCLHWRKQGLPADHLALFQYNQ
AMASYFSRYKFFGDYALRKVFASELKLMGKEWKDWQLVPIPLSQKSLEERGFNQVEALLEEAGLSYYNLLEKKETVKQSS
LSRKERLETQQPFCLISETVPAEKILLIDDIYTTGQTIQHARKILLKAGAKTVKSFSIAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=794622 PXH68_RS02110 WP_316716073.1 445891..446553(+) (comFC/cflB) [Streptococcus suivaginalis strain 29896]
ATCAACTGCCTTCTCTGTGATCAACCTATTTCGACAAAAGAAAGTTTTTCAAACATCTTTAGTTTTTCCAAGAGCCAGGC
AAGAACTTGTCAAGTATGCAAGGCGCAATTTGAGAAAATTGGGCAGAAGCATTGTCCAAGTTGTTACAAATACGATGAGG
ATAAAGAATGCGAAGATTGTTTACATTGGCGAAAGCAAGGTTTGCCCGCGGATCATTTGGCACTTTTTCAGTACAACCAA
GCAATGGCCAGCTATTTTTCACGCTACAAGTTTTTTGGTGATTATGCTTTAAGAAAAGTTTTTGCTTCAGAACTTAAACT
AATGGGTAAGGAATGGAAGGATTGGCAGTTGGTCCCCATTCCCCTCAGTCAAAAAAGTCTTGAAGAAAGGGGATTTAATC
AAGTCGAGGCCTTGCTAGAGGAAGCCGGTTTATCCTATTACAACTTATTAGAAAAGAAGGAGACGGTCAAACAATCCAGT
CTCAGTCGAAAGGAACGACTCGAAACGCAACAACCGTTTTGCTTAATCTCAGAAACAGTGCCAGCAGAAAAGATTCTTTT
AATTGATGATATCTATACGACAGGGCAGACCATTCAACACGCTAGGAAAATACTTTTGAAAGCAGGAGCGAAAACAGTCA
AGAGTTTTTCAATCGCTCGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae Rx1

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae D39

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae R6

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae TIGR4

49.545

100

0.495
  comFC/cflB Streptococcus mitis SK321

49.091

100

0.491