Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   PXH68_RS02105 Genome accession   NZ_CP118733
Coordinates   444585..445910 (+) Length   441 a.a.
NCBI ID   WP_398582967.1    Uniprot ID   -
Organism   Streptococcus suivaginalis strain 29896     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439585..450910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS02080 (PXH68_02080) - 440409..441050 (+) 642 WP_158455590.1 response regulator transcription factor -
  PXH68_RS02085 (PXH68_02085) - 441123..442523 (+) 1401 WP_248027112.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  PXH68_RS02090 (PXH68_02090) - 442525..442890 (+) 366 WP_158455586.1 S1 RNA-binding domain-containing protein -
  PXH68_RS02095 (PXH68_02095) cysK 442901..443827 (-) 927 WP_248027110.1 cysteine synthase A -
  PXH68_RS02100 (PXH68_02100) - 443916..444548 (-) 633 WP_248027108.1 YigZ family protein -
  PXH68_RS02105 (PXH68_02105) comFA/cflA 444585..445910 (+) 1326 WP_398582967.1 DEAD/DEAH box helicase Machinery gene
  PXH68_RS02110 (PXH68_02110) comFC/cflB 445891..446553 (+) 663 WP_316716073.1 ComF family protein Machinery gene
  PXH68_RS02115 (PXH68_02115) hpf 446628..447167 (+) 540 WP_158455578.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 50077.68 Da        Isoelectric Point: 8.2079

>NTDB_id=794621 PXH68_RS02105 WP_398582967.1 444585..445910(+) (comFA/cflA) [Streptococcus suivaginalis strain 29896]
MDYESISMRDENKYGKWFTQDQLTREEIALARKLEQNTGPKTCLRCGADYEEIGRLPNQTYYCRACILLGRLRSDQALYY
FPQKRFPEQSYLKWQGQLSTWQEKISTALQKQVENGRPSLVHAVTGAGKTEMIYQTIDTILKQGGAVCLASPRVDVCIEL
YQRLQKDFTCPISLLHGESADYFRTPLVIATTHQLLKFYQAFDLLIIDEVDAFPYVDNPILYQAVDNALKENGVRVFLTA
TATDRLDKMVRNGQLERLSLPRRFHGNPLVIPTPIWLGSLEASIKKTCLPTKLMKAILMQQATGFPLLLFVAEIERGRQV
QEILEKEFGKGSVGCVSSQTSDRLDQVQAFREGKITILISTTILERGVTFPGVDVFVLESHHQLFTKSSLVQISGRVGRS
MDRADGLLYFFHNGKTKAMQSAIKEIREMNKEAKDDQLPSL

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=794621 PXH68_RS02105 WP_398582967.1 444585..445910(+) (comFA/cflA) [Streptococcus suivaginalis strain 29896]
ATGGATTACGAATCAATAAGTATGAGAGATGAAAACAAGTACGGAAAATGGTTCACGCAAGATCAATTAACAAGAGAAGA
AATCGCCCTAGCAAGAAAACTAGAGCAAAATACTGGTCCAAAGACATGTCTGCGATGTGGAGCCGACTATGAAGAGATAG
GTAGATTGCCGAATCAGACCTATTATTGTAGAGCATGCATCTTGTTGGGAAGGCTACGTTCTGATCAAGCCTTGTATTAT
TTTCCGCAAAAAAGATTTCCTGAACAATCCTATTTAAAATGGCAAGGACAATTGTCGACTTGGCAGGAAAAGATTTCAAC
CGCCCTTCAAAAACAAGTTGAAAATGGACGACCAAGTCTTGTCCATGCCGTTACAGGAGCAGGAAAGACAGAGATGATTT
ACCAAACCATCGACACTATTCTGAAACAGGGTGGGGCGGTTTGTTTAGCCAGCCCGCGCGTGGATGTTTGCATCGAACTT
TACCAACGGCTTCAAAAAGACTTTACTTGTCCGATTAGCCTTTTGCATGGAGAATCAGCAGATTATTTTCGAACACCCTT
GGTCATCGCTACCACACATCAATTGCTAAAATTTTACCAGGCTTTTGATTTATTGATAATCGATGAAGTTGATGCCTTTC
CCTATGTAGATAACCCCATTCTTTACCAGGCGGTTGACAATGCGCTCAAAGAAAATGGGGTAAGAGTATTTTTGACGGCA
ACTGCAACAGATCGGCTTGACAAGATGGTCAGAAATGGCCAACTGGAACGGCTTAGTTTGCCAAGAAGATTTCATGGGAA
TCCCTTGGTTATCCCGACACCGATTTGGCTCGGTAGCCTTGAAGCTTCTATTAAAAAGACTTGCCTACCAACTAAACTGA
TGAAAGCCATCTTGATGCAACAGGCGACAGGATTTCCTTTGCTATTGTTTGTTGCTGAGATTGAAAGAGGCCGACAGGTT
CAGGAAATCCTTGAGAAGGAGTTTGGAAAAGGGAGTGTAGGCTGTGTTTCTAGTCAAACCAGTGACCGGCTAGACCAAGT
CCAAGCCTTTCGAGAGGGAAAGATTACTATTCTTATCTCTACAACCATTCTCGAAAGAGGAGTCACCTTTCCAGGGGTAG
ATGTTTTCGTATTAGAATCCCATCATCAGTTGTTTACAAAATCCAGTCTCGTCCAAATTTCAGGAAGAGTTGGGCGTAGT
ATGGATAGGGCAGATGGACTATTGTACTTTTTTCACAATGGAAAAACAAAGGCCATGCAATCAGCAATAAAAGAGATTCG
AGAAATGAATAAGGAGGCAAAAGATGATCAACTGCCTTCTCTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(296-399)

Type III restriction enzyme, res subunit (ResIII)

(97-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

62.295

96.825

0.603
  comFA/cflA Streptococcus mitis NCTC 12261

62.061

96.825

0.601
  comFA/cflA Streptococcus pneumoniae D39

62.559

95.692

0.599
  comFA/cflA Streptococcus pneumoniae TIGR4

62.559

95.692

0.599
  comFA/cflA Streptococcus pneumoniae R6

62.559

95.692

0.599
  comFA/cflA Streptococcus pneumoniae Rx1

62.559

95.692

0.599
  comFA Lactococcus lactis subsp. cremoris KW2

51.932

93.878

0.488
  comFA Bacillus subtilis subsp. subtilis str. 168

40.196

92.517

0.372
  comFA Latilactobacillus sakei subsp. sakei 23K

40.351

90.476

0.365