Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PXH68_RS01530 Genome accession   NZ_CP118733
Coordinates   319656..320156 (+) Length   166 a.a.
NCBI ID   WP_248027248.1    Uniprot ID   A0AA96ZZG2
Organism   Streptococcus suivaginalis strain 29896     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 314656..325156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS01520 (PXH68_01520) - 315275..319237 (+) 3963 WP_248027249.1 sialidase domain-containing protein -
  PXH68_RS01525 (PXH68_01525) rpsF 319354..319644 (+) 291 WP_024418487.1 30S ribosomal protein S6 -
  PXH68_RS01530 (PXH68_01530) ssbA 319656..320156 (+) 501 WP_248027248.1 single-stranded DNA-binding protein Machinery gene
  PXH68_RS01535 (PXH68_01535) rpsR 320190..320429 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  PXH68_RS01540 (PXH68_01540) - 320911..321573 (-) 663 WP_205031398.1 DUF1129 domain-containing protein -
  PXH68_RS01545 (PXH68_01545) - 321588..322532 (-) 945 WP_105109663.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18264.02 Da        Isoelectric Point: 4.7294

>NTDB_id=794616 PXH68_RS01530 WP_248027248.1 319656..320156(+) (ssbA) [Streptococcus suivaginalis strain 29896]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGAYQSNPGNSFAGGSDFGSSYQAPAQSTPNFAREESPFGSSNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=794616 PXH68_RS01530 WP_248027248.1 319656..320156(+) (ssbA) [Streptococcus suivaginalis strain 29896]
ATGATAAATAATGTAGTATTGGTCGGTCGCATGACCCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCTGTTGC
GACTTTTACACTTGCGGTTAACCGTAATTTTAAAAATCAAAGCGGTGAGCGTGAAGCGGATTTTATCAACGTAGTCATTT
GGCGCCAACAAGCTGAAAACTTAGCAAATTGGGCTAAAAAAGGTGCTCTGATTGGGGTTACAGGTCGAATTCAGACCCGT
AGCTACGATAACCAACAAGGGCAACGTGTCTATGTGACTGAGGTGGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGACAAGGTGGAGCTTATCAATCAAACCCAGGCAACTCGTTTGCTGGTGGAAGTGATTTTGGTTCATCCT
ACCAAGCGCCTGCACAATCGACGCCAAACTTTGCGCGTGAAGAAAGTCCATTCGGTTCAAGTAATCCAATGGATATTTCA
GATGATGACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.608
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.578
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

63.855

0.361
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361
  ssbB/cilA Streptococcus pneumoniae TIGR4

48

75.301

0.361