Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PWO00_RS27245 Genome accession   NZ_CP118718
Coordinates   5229007..5229507 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia aryabhattai strain G5MAi6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5224007..5234507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO00_RS27225 (PWO00_27220) rplI 5225162..5225611 (-) 450 WP_114897068.1 50S ribosomal protein L9 -
  PWO00_RS27230 (PWO00_27225) - 5225608..5227581 (-) 1974 WP_025752414.1 DHH family phosphoesterase -
  PWO00_RS27235 (PWO00_27230) - 5227618..5228562 (-) 945 WP_275036649.1 YybS family protein -
  PWO00_RS27240 (PWO00_27235) rpsR 5228701..5228940 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  PWO00_RS27245 (PWO00_27240) ssbA 5229007..5229507 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  PWO00_RS27250 (PWO00_27245) rpsF 5229555..5229842 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  PWO00_RS27255 (PWO00_27250) ychF 5230032..5231132 (-) 1101 WP_013059916.1 redox-regulated ATPase YchF -
  PWO00_RS27260 (PWO00_27255) - 5231303..5231500 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  PWO00_RS27265 (PWO00_27260) - 5231515..5232408 (-) 894 WP_028409761.1 mechanosensitive ion channel family protein -
  PWO00_RS27270 (PWO00_27265) - 5232476..5233489 (-) 1014 WP_114897069.1 hypothetical protein -
  PWO00_RS27275 (PWO00_27270) yyaC 5233576..5234196 (+) 621 WP_071270103.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=794578 PWO00_RS27245 WP_013059914.1 5229007..5229507(-) (ssbA) [Priestia aryabhattai strain G5MAi6]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=794578 PWO00_RS27245 WP_013059914.1 5229007..5229507(-) (ssbA) [Priestia aryabhattai strain G5MAi6]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCGAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367