Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Herbaro_RS00525 Genome accession   NZ_CP118632
Coordinates   132003..133526 (-) Length   507 a.a.
NCBI ID   WP_275011915.1    Uniprot ID   -
Organism   Herbaspirillum sp. WKF16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127003..138526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Herbaro_RS00505 (Herbaro_00505) - 127452..128651 (+) 1200 WP_275011911.1 MFS transporter -
  Herbaro_RS00510 (Herbaro_00510) - 128759..129103 (-) 345 WP_275011912.1 DUF1840 domain-containing protein -
  Herbaro_RS00515 (Herbaro_00515) - 129296..129832 (-) 537 WP_275011913.1 hypothetical protein -
  Herbaro_RS00520 (Herbaro_00520) - 129969..131981 (+) 2013 WP_275011914.1 oligopeptide transporter, OPT family -
  Herbaro_RS00525 (Herbaro_00525) comM 132003..133526 (-) 1524 WP_275011915.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Herbaro_RS00530 (Herbaro_00530) - 133603..133848 (-) 246 WP_275011916.1 accessory factor UbiK family protein -
  Herbaro_RS00535 (Herbaro_00535) - 134278..135075 (+) 798 WP_275011917.1 TorF family putative porin -
  Herbaro_RS00540 (Herbaro_00540) - 135088..135426 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  Herbaro_RS00545 (Herbaro_00545) amt 135442..136977 (+) 1536 WP_275011918.1 ammonium transporter -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53685.45 Da        Isoelectric Point: 9.0156

>NTDB_id=794105 Herbaro_RS00525 WP_275011915.1 132003..133526(-) (comM) [Herbaspirillum sp. WKF16]
MSLAVLHSRALSGMAAPPVTVEVHLANGLPAFAIVGLPEAEVKEAKDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILVASGQMPGDELDDYEFAGELSLSGQLRAVRGALAMTCAMHRAGRDDGRKRGFILPAANAGEAALVAGASI
LPAASLLEVCAHFTARGAEGRLQRYRATPAVAAPAYPDFADVKGQLQARRAMEVAAAGNHSILLVGPPGSGKSMLASRFP
GILPPMDEEQALESAAVRSLTGGFDAAQWKQRPYRAPHHTASAVALVGGGGTPRPGEISLAHHGVLFLDELPEFQRAVLE
VLREPLESGRITISRAARQADFPARFQLIAAMNPCPCGFHGHPNGKCRCTPDIVRRYQGRISGPLLDRIDMQMPVGSLSP
AELADQAPGEASVAIAARVGQAFARQLQRQGVSNSQLAGSAIDVHCRPDDAGAQLLQTALARLDWSARSYHRVLKVARTI
ADLAGQAQVGKTHVAEAIQYRRGFQGP

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=794105 Herbaro_RS00525 WP_275011915.1 132003..133526(-) (comM) [Herbaspirillum sp. WKF16]
ATGAGCCTGGCCGTCCTCCACAGCCGCGCACTGTCCGGCATGGCCGCGCCGCCGGTCACCGTGGAAGTCCATCTGGCCAA
CGGCCTGCCCGCCTTTGCCATCGTCGGCCTGCCCGAAGCCGAAGTGAAGGAGGCCAAGGACCGCGTCCGGGCCGCGCTGC
AAAATGCGCGGTTCGAATTCCCGGCGCGGCGCATCACGGTCAACCTGGCGCCGGCCGACCTTCCCAAGGAATCAGGACGA
TTCGACCTGCCCATTGCACTGGGCATCCTGGTCGCCTCCGGGCAGATGCCGGGCGACGAGCTCGACGACTACGAATTCGC
CGGCGAGCTGTCGCTCTCGGGCCAGTTGCGCGCCGTGCGCGGCGCGCTGGCGATGACCTGCGCCATGCACCGTGCCGGCC
GCGACGACGGCCGCAAGCGCGGCTTCATCCTGCCTGCCGCCAATGCCGGCGAGGCGGCGCTGGTCGCCGGCGCTTCCATC
CTGCCGGCGGCCTCGCTGCTGGAGGTCTGCGCGCATTTCACCGCGCGCGGCGCCGAGGGCCGCCTGCAGCGCTATCGCGC
AACGCCCGCCGTCGCCGCGCCGGCCTATCCCGACTTCGCCGACGTCAAGGGCCAGTTGCAGGCCCGGCGCGCCATGGAAG
TGGCGGCCGCGGGCAACCACAGCATCTTGCTGGTGGGCCCGCCGGGATCCGGCAAGTCCATGCTGGCCTCGCGCTTCCCC
GGCATCCTGCCGCCGATGGATGAAGAACAGGCGCTGGAGTCGGCCGCGGTGCGCTCGTTGACCGGCGGCTTCGATGCCGC
CCAATGGAAGCAGCGCCCCTACCGCGCGCCGCACCATACCGCCTCGGCGGTGGCGCTGGTGGGTGGCGGCGGCACGCCCA
GGCCGGGCGAAATTTCGCTGGCGCATCATGGCGTGCTGTTTCTCGATGAACTCCCGGAGTTTCAAAGGGCCGTGCTGGAA
GTGCTGCGCGAGCCGCTCGAATCCGGCCGCATCACCATCTCGCGCGCGGCGCGGCAGGCCGACTTCCCGGCGCGCTTCCA
GCTGATCGCGGCGATGAATCCCTGTCCTTGCGGCTTCCATGGCCATCCCAACGGCAAGTGCCGCTGCACGCCCGATATCG
TCCGCCGTTACCAGGGCCGCATTTCCGGCCCCTTGCTTGATCGCATCGACATGCAGATGCCGGTCGGTTCGCTATCGCCC
GCCGAACTGGCCGACCAGGCGCCGGGCGAGGCCAGCGTCGCCATCGCCGCCCGCGTCGGCCAAGCCTTCGCGCGGCAGTT
GCAGCGCCAGGGCGTGAGCAACAGCCAGCTGGCGGGTAGCGCCATCGACGTGCACTGTCGTCCCGACGACGCCGGCGCGC
AGTTGTTGCAAACCGCGCTGGCGCGCCTGGACTGGTCCGCACGCTCCTATCATCGGGTGCTCAAGGTGGCGCGCACGATC
GCCGACCTGGCCGGGCAGGCGCAGGTCGGCAAGACCCATGTGGCGGAGGCGATCCAATATCGCCGGGGCTTCCAGGGGCC
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Subunit ChlI of Mg-chelatase (ChlI)

(21-148)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.183

99.408

0.519
  comM Vibrio campbellii strain DS40M4

51.786

99.408

0.515
  comM Glaesserella parasuis strain SC1401

50.791

99.803

0.507
  comM Legionella pneumophila str. Paris

50.294

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.294

100

0.507
  comM Haemophilus influenzae Rd KW20

49.902

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.706

100

0.45